View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_47 (Length: 276)
Name: NF1499_low_47
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_47 |
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Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 31 - 260
Target Start/End: Complemental strand, 5509910 - 5509681
Alignment:
| Q |
31 |
gaattttaaaggaaaaatgtcgaggggttggtttggacaaccatagtgtggtgcaatacaaggatggagcaacttagacatgggattcaagttcttcaca |
130 |
Q |
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| T |
5509910 |
gaattttaaaggaaaaatgttgaggggttggtttggacaaccatagtgtggtgcaatacaaggatggagcaactcagacatgggattcaagttcttcaca |
5509811 |
T |
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| Q |
131 |
ctcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagccaaaaatgaagtcaa |
230 |
Q |
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| T |
5509810 |
ctcttgtacaaattaccaacacatctaggaaaattgttgggtattaaaatctttaaaatggaccctaatggaatggtaaggaagccaagaatgaagtcaa |
5509711 |
T |
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| Q |
231 |
caaaatctccatcagcttctgcaatgacga |
260 |
Q |
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| T |
5509710 |
taaaatctccatcagcttctgcactgacga |
5509681 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 118 - 257
Target Start/End: Complemental strand, 5489149 - 5489010
Alignment:
| Q |
118 |
caagttcttcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagcca |
217 |
Q |
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| T |
5489149 |
caagttctccacactcttgtacaaattaccaacacatccagcaaaagagttcggtcccaaaagctttacaatggatcctaatggcatggtaagaaagcta |
5489050 |
T |
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| Q |
218 |
aaaatgaagtcaacaaaatctccatcagcttctgcaatga |
257 |
Q |
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| T |
5489049 |
aagatgaagtcaacaaaatcttcattggcttctgcaatga |
5489010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 118 - 264
Target Start/End: Original strand, 5457869 - 5458015
Alignment:
| Q |
118 |
caagttcttcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagcca |
217 |
Q |
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| T |
5457869 |
caagttctccacactcttgtacaaattaccaacacatccagcaaaattattagcccctaaaagatttacaactgaccctaatggcaccgcaaggaagcta |
5457968 |
T |
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| Q |
218 |
aaaatgaagtcaacaaaatctccatcagcttctgcaatgacgatatt |
264 |
Q |
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| T |
5457969 |
aaaatgaagtcaacaaaatctccattagtttctgcaaagactatatt |
5458015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 5435977 - 5436101
Alignment:
| Q |
118 |
caagttcttcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagcca |
217 |
Q |
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| T |
5435977 |
caagttcaccacactcttgtacaaattaccaacacatccagcaaaagagttagctcctaaaagttttacaatggagcctaatggcaccgtaaggaagctt |
5436076 |
T |
|
| Q |
218 |
aaaatgaagtcaacaaaatctccat |
242 |
Q |
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||||||||||||||||||||||||| |
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| T |
5436077 |
aaaatgaagtcaacaaaatctccat |
5436101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 237
Target Start/End: Original strand, 5446603 - 5446718
Alignment:
| Q |
122 |
ttcttcacactcttgtacaaattaccaacacatctaggaaaaatgttcggaattaaaatctttaaaatggaccctaatggaatggtaaggaagccaaaaa |
221 |
Q |
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|||| ||||||||||||||||||||||||||||| || || | || | |||| ||||| |||||| |||||||| ||||||||||||| ||||| |
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| T |
5446603 |
ttctccacactcttgtacaaattaccaacacatccagcaatagaattaccatccaaaagctttacaatggatcctaatggcatggtaaggaagctaaaaa |
5446702 |
T |
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| Q |
222 |
tgaagtcaacaaaatc |
237 |
Q |
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| T |
5446703 |
tgaagccaacaaaatc |
5446718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 181 - 234
Target Start/End: Original strand, 5996507 - 5996560
Alignment:
| Q |
181 |
ctttaaaatggaccctaatggaatggtaaggaagccaaaaatgaagtcaacaaa |
234 |
Q |
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||||| ||||||||||||||| || |||||||||| ||| |||||||||||||| |
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| T |
5996507 |
ctttacaatggaccctaatggtattgtaaggaagctaaacatgaagtcaacaaa |
5996560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 46 - 95
Target Start/End: Original strand, 5996354 - 5996403
Alignment:
| Q |
46 |
aatgtcgaggggttggtttggacaaccatagtgtggtgcaatacaaggat |
95 |
Q |
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| T |
5996354 |
aatgttgaggggctggtttggacaaccaaagtgtggtgcaacaccaggat |
5996403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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