View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_49 (Length: 252)
Name: NF1499_low_49
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_49 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 44314240 - 44314006
Alignment:
| Q |
1 |
ctgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataattattttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
44314240 |
ctgaggtgcatagtgacctatcttaccacatacataacaatgtcctccatttccatttgtgaaagtgggattagtaacacgaggaacatgattattttta |
44314141 |
T |
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| Q |
101 |
ttgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttgg |
200 |
Q |
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| T |
44314140 |
tagtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttgg |
44314041 |
T |
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| Q |
201 |
tagccctgctctcctttcggttggtatcctctatg |
235 |
Q |
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| T |
44314040 |
cagccctgctctcctttcggttggtattctctatg |
44314006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 34098652 - 34098886
Alignment:
| Q |
1 |
ctgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataattattttta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |
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| T |
34098652 |
ctgaggtgcatagtgacctatcttaccacatacataacaatgtcctccatttccatttgtgaaagtgggattagtaacacgaggaacatgattattttta |
34098751 |
T |
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| Q |
101 |
ttgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttgg |
200 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34098752 |
tagtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttgg |
34098851 |
T |
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| Q |
201 |
tagccctgctctcctttcggttggtatcctctatg |
235 |
Q |
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| T |
34098852 |
cagccctgctctcctttcggttggtattctctatg |
34098886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 40332 - 40565
Alignment:
| Q |
1 |
ctgaggtgcatagtgacctatcttaccacatacataacagtgtcctccatttccatttttgaaagtgggattagtaacacgaggaacataattattttta |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||||||| |
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| T |
40332 |
ctgaggtgcatagtgacctttcttaccacatacataacagtgtcctccatttccattttcgaaagagggattagtaacacgaggaacatgattattttta |
40431 |
T |
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| Q |
101 |
ttgtgaccagatttacgattaggtttgttatcatacctccttttctgattagtgttgttctggatcagatttgcttgggaagctaaagccctggccttgg |
200 |
Q |
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|||||||||| |||| ||||||||||||||||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
40432 |
ttgtgaccaggtttatgattaggtttgttatcatacctctttttctaattagtgttgttttggatcagatttgcttgggaagctaaagccctggctttgg |
40531 |
T |
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| Q |
201 |
tagccctgctctcctttcggttggtatcctctat |
234 |
Q |
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|||||||||||||||| |||||||||||||||| |
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| T |
40532 |
cagccctgctctcctttaggttggtatcctctat |
40565 |
T |
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