View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1499_low_5 (Length: 559)
Name: NF1499_low_5
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 56 - 543
Target Start/End: Complemental strand, 39967198 - 39966711
Alignment:
| Q |
56 |
ttgaggaaacatcccggaaacaacgtctctttataaactgccagttcctgtaagcacaaacctagaatcgattctcttcctttattatacttaacttttc |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39967198 |
ttgaggaaacatcccggaaacaacgtctctttataaactgccagttcccgtaagcacaaacctagaatcgattctcttcctttattatacttaacttttc |
39967099 |
T |
|
| Q |
156 |
tcaatcatcatcacaacaatattccttattcctcttcaacaagcacacattgatgttcaatgatgataaaaaatgtggtagcaatgatggtggatggtgt |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
39967098 |
tcaatcatcatcacaacaatattccttattcctcttcaacaagcacacattgatgttcaatgatgataaaaaatgtggtagcaatgatggtggatagtgt |
39966999 |
T |
|
| Q |
256 |
tactcactttgtcaatacacgttgggctcttcaagaaaggagatggtctaatacttttcatattgtcatgtctgctaccgtgtctgtaaccatgccattt |
355 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39966998 |
tactcactttgtcaatacacgttgggctcttcaagaaaggagatggtctaatacttttcatattgtcatgtctgctaccgtgtctgtaaccatgccattt |
39966899 |
T |
|
| Q |
356 |
gttctctgctttttgtctgcttataatcatatgcaaagacgaggtgatattgtattttttgcctctttctgatgtaaactagtactccaggaactcactc |
455 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39966898 |
gttctctgctttttgtctgcttataatcatatgcaaagacgaggtgatattgtattttttgcctctttctgatgtaaactagtactccaggaactcactc |
39966799 |
T |
|
| Q |
456 |
ttaatcatttagcaaatcttattaaatttttatttataagtgatatggtatgagatgaattgttaccgaagcttttcttgttaatact |
543 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
39966798 |
ttaatcatttagcaaatcttattaaatttttatttataagtgatatggtatgagatgaattgttacggaagcttttcttgttaatact |
39966711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University