View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_54 (Length: 247)
Name: NF1499_low_54
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_54 |
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Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 40941051 - 40940810
Alignment:
| Q |
1 |
tccagaagtgtcttcaggagtttcaccgcttcagcggaggagtcacttgacgtatcaattttggaaaaactttcttttacaactgatgaagctcttccca |
100 |
Q |
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| T |
40941051 |
tccagaagtgtcttcaggagtttcaccgcttcagcggaggagtcacttgacgtatcaattttggaaaaactttcttttacaactgatgaagctcttccca |
40940952 |
T |
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| Q |
101 |
aattatccgcaacatcaagtaaactctttgcgaaattctacagcacatttaaataaatcagcnnnnnnnttatgagtaagttatttgggacaaaaatgtt |
200 |
Q |
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| T |
40940951 |
aattatccgcaacatcaagtaaactctttgcgaaattctacagcacatttaaataaatcagcaaaaaaattatgagtaagttatttgggacaaaaatgtt |
40940852 |
T |
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| Q |
201 |
caaattttgacctgtatagcgaatttccttgaattctctgct |
242 |
Q |
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| T |
40940851 |
caaattttgacctgtatagcgaatttccttgaattctctgct |
40940810 |
T |
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Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 21505207 - 21505120
Alignment:
| Q |
55 |
tcaattttggaaaaactttcttttacaactgatgaagctcttcccaaattatccgcaacatcaagtaaactctttgcgaaattctaca |
142 |
Q |
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|||||||| |||||||| || ||||||||||| ||||||||||||||||| || |||||||||||||||||||| || ||| |||||| |
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| T |
21505207 |
tcaatttttgaaaaactgtcctttacaactgaagaagctcttcccaaattgtcagcaacatcaagtaaactcttggcaaaactctaca |
21505120 |
T |
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