View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1499_low_58 (Length: 238)

Name: NF1499_low_58
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1499_low_58
NF1499_low_58
[»] chr1 (2 HSPs)
chr1 (1-220)||(32457893-32458111)
chr1 (1-106)||(26807516-26807621)
[»] chr4 (3 HSPs)
chr4 (1-106)||(28707664-28707771)
chr4 (33-104)||(17813280-17813349)
chr4 (1-106)||(18441039-18441143)
[»] chr2 (3 HSPs)
chr2 (1-106)||(16801935-16802039)
chr2 (1-106)||(16841221-16841325)
chr2 (1-106)||(28485132-28485236)
[»] chr8 (2 HSPs)
chr8 (33-106)||(26470697-26470770)
chr8 (1-74)||(17850054-17850127)
[»] chr5 (1 HSPs)
chr5 (33-94)||(26150324-26150384)
[»] chr3 (1 HSPs)
chr3 (1-70)||(978583-978651)


Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 32457893 - 32458111
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32457893 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttg 32457992  T
Q  101 gttaattcgttcctaagttaggggcgtctataaagattgaactcctagatcaattgtaaaacacattttgacgagcagacgatcacataaacacgatttc 200  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32457993 gttaattcgttcctaagttaggggcgtctataaagattgaactcttaggtcaattgtaaaacacattttgacgagcagacgatcacataaacacgatttc 32458092  T
Q  201 taaagggttttggagtgagc 220  Q
    ||||||| ||||||||||||    
T  32458093 taaaggg-tttggagtgagc 32458111  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 26807621 - 26807516
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttg 100  Q
    ||||||||||||||||| || || || | || ||||| ||||||||||||||| ||||||||||||| || || |||  |||| ||| |||||| |||||    
T  26807621 taggttaggtcatgaaacagaaacttccgtgtaattatttgttcatgtaactttaaatgattctatggatattcaatgaattattttcttatttcatttg 26807522  T
Q  101 gttaat 106  Q
    ||||||    
T  26807521 gttaat 26807516  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 28707664 - 28707771
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagtt-gttcatgtaacttaaaatgattctatgaattttaaatcgattactttgtta-tttaatt 98  Q
    ||||||||||||||||||| |||||| | || |||||||| ||||||||||||| |||| ||||| | ||| |||| ||||||||||||||| ||| |||    
T  28707664 taggttaggtcatgaaagatgaatttccttgtaattagtttgttcatgtaactttaaataattctcttaatattaagtcgattactttgttattttcatt 28707763  T
Q  99 tggttaat 106  Q
    ||||||||    
T  28707764 tggttaat 28707771  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 104
Target Start/End: Complemental strand, 17813349 - 17813280
Alignment:
Q  33 aattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttggtta 104  Q
    ||||||||||||||||||||| |||| |||||||||| | | | |||||||||||| ||||| |||||||||    
T  17813349 aattagttgttcatgtaactttaaatcattctatgaa-tatcagtcgattactttg-tattttatttggtta 17813280  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 18441039 - 18441143
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttg 100  Q
    |||||||||||||||| ||||||||||  || ||||  ||  | |||||| || ||||||||||||||| ||| | || |||||||||  |||| |||||    
T  18441039 taggttaggtcatgaaggaggaatttttctgtaattgtttaattatgtaaatttaaatgattctatgaa-tttcagtctattactttgccattttatttg 18441137  T
Q  101 gttaat 106  Q
    ||||||    
T  18441138 gttaat 18441143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16801935 - 16802039
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttg 100  Q
    ||||||| ||||||||| |||||||||  || ||||| ||||||||||||||| | ||||||||||  ||||| |||| ||||||||||||||  ||||     
T  16801935 taggttaagtcatgaaaaaggaatttttctgtaattatttgttcatgtaactttatatgattctatagatttt-aatcaattactttgttattatattta 16802033  T
Q  101 gttaat 106  Q
    ||||||    
T  16802034 gttaat 16802039  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 106
Target Start/End: Original strand, 16841221 - 16841325
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttg 100  Q
    ||||||| ||||||||| |||||||||  || ||||| ||||||||||||||| | ||||||||||  ||||| |||| ||||||||||||||  ||||     
T  16841221 taggttaagtcatgaaaaaggaatttttctgtaattatttgttcatgtaactttatatgattctatagatttt-aatcaattactttgttattatattta 16841319  T
Q  101 gttaat 106  Q
    ||||||    
T  16841320 gttaat 16841325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 28485236 - 28485132
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttg 100  Q
    ||||||||||||||||||||||| |||| || ||||   || | ||||||||| |||| || |||||||| | |  | |||||||||| ||||| |||||    
T  28485236 taggttaggtcatgaaagaggaaatttcttgtaattgtctgattatgtaactttaaattatactatgaatctcattt-gattactttgctattttatttg 28485138  T
Q  101 gttaat 106  Q
    ||||||    
T  28485137 gttaat 28485132  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 33 - 106
Target Start/End: Original strand, 26470697 - 26470770
Alignment:
Q  33 aattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttatttaatttggttaat 106  Q
    |||||||||| ||| |||||| |||||||| | ||||| |||| |||||||||||||||||| | |||||||||    
T  26470697 aattagttgtgcatttaactttaaatgattatctgaatattaagtcgattactttgttatttcacttggttaat 26470770  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 17850054 - 17850127
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaatttta 74  Q
    ||||||||||| | |||||||||||| | || ||||| || ||| |||||||| |||||||| |||||||||||    
T  17850054 taggttaggtcgtaaaagaggaatttccctgtaattatttattcttgtaactttaaatgattatatgaatttta 17850127  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 94
Target Start/End: Complemental strand, 26150384 - 26150324
Alignment:
Q  33 aattagttgttcatgtaacttaaaatgattctatgaattttaaatcgattactttgttattt 94  Q
    ||||| ||||||||||||||| ||||||||||||||| ||| | ||||||||||| ||||||    
T  26150384 aattatttgttcatgtaactttaaatgattctatgaa-tttcagtcgattactttattattt 26150324  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 978651 - 978583
Alignment:
Q  1 taggttaggtcatgaaagaggaattttcatgcaattagttgttcatgtaacttaaaatgattctatgaat 70  Q
    ||||||||||||||||| ||| | || | || ||||| ||||||||||||||| |||| |||||||||||    
T  978651 taggttaggtcatgaaataggtacttccctgtaatta-ttgttcatgtaactttaaataattctatgaat 978583  T

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