View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1499_low_60 (Length: 234)

Name: NF1499_low_60
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1499_low_60
NF1499_low_60
[»] chr4 (7 HSPs)
chr4 (1-220)||(21834358-21834577)
chr4 (77-139)||(1548557-1548619)
chr4 (85-142)||(566101-566158)
chr4 (88-141)||(644746-644799)
chr4 (18-59)||(1600295-1600336)
chr4 (88-141)||(12121588-12121641)
chr4 (106-142)||(546846-546882)
[»] chr6 (18 HSPs)
chr6 (9-139)||(19632275-19632405)
chr6 (156-215)||(6589308-6589367)
chr6 (17-139)||(6594739-6594861)
chr6 (9-144)||(6589451-6589586)
chr6 (9-142)||(6394700-6394833)
chr6 (21-130)||(7994324-7994433)
chr6 (9-142)||(14820529-14820662)
chr6 (9-140)||(10579869-10580000)
chr6 (156-215)||(6416021-6416080)
chr6 (156-215)||(6432216-6432275)
chr6 (156-215)||(6394919-6394978)
chr6 (156-215)||(6410061-6410120)
chr6 (106-144)||(6603330-6603368)
chr6 (9-94)||(6423053-6423138)
chr6 (156-213)||(6594593-6594650)
chr6 (98-142)||(6432086-6432130)
chr6 (90-142)||(6585367-6585419)
chr6 (14-50)||(6597120-6597156)
[»] chr7 (1 HSPs)
chr7 (9-142)||(15092281-15092414)
[»] chr3 (2 HSPs)
chr3 (156-215)||(13470717-13470776)
chr3 (103-142)||(51113911-51113950)
[»] chr1 (1 HSPs)
chr1 (155-194)||(19468505-19468544)
[»] chr2 (1 HSPs)
chr2 (106-142)||(45245215-45245251)


Alignment Details
Target: chr4 (Bit Score: 192; Significance: 1e-104; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 21834577 - 21834358
Alignment:
Q  1 cttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |||    
T  21834577 cttacaggatactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtcacttaaatgcaaatcccccaaattaatttctctcagttgtg 21834478  T
Q  101 tacatttttctaccatatgtttcactcccttctctgtgacataacgtccaacacctgacaagttcaacacctccagcatgggaactacaaagttgatact 200  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  21834477 tacatctttctaccatatgtttcattcccttctctgtgacataacgtccaacacctgacaagtccaacacctccagcttgggaactacaaagttgatact 21834378  T
Q  201 atgtagcttcactttataac 220  Q
    ||||||||||||||||||||    
T  21834377 atgtagcttcactttataac 21834358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 1548619 - 1548557
Alignment:
Q  77 ccaaatgaatttctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtga 139  Q
    |||||| ||||||||||||| | |  || |||||| | |||||||||||||||||||||||||    
T  1548619 ccaaattaatttctctcagttgcgagcagttttcttctatatgtttcactcccttctctgtga 1548557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 85 - 142
Target Start/End: Original strand, 566101 - 566158
Alignment:
Q  85 atttctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgacat 142  Q
    |||||||||||| |||| || ||||| ||||  |||||||||||||||||||| ||||    
T  566101 atttctctcagttgtgtgcagttttccaccaggtgtttcactcccttctctgtaacat 566158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Original strand, 644746 - 644799
Alignment:
Q  88 tctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgaca 141  Q
    ||||||||| |||| |||||||| |||| |||||||||||| ||||| ||||||    
T  644746 tctctcagttgtgtgcatttttcaaccacatgtttcactcctttctccgtgaca 644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 1600295 - 1600336
Alignment:
Q  18 aagaaggcatccacgacgcgagaagaatttcctcttttcgtc 59  Q
    ||||||||||||| ||| ||||||||||||||| ||||||||    
T  1600295 aagaaggcatccatgactcgagaagaatttcctattttcgtc 1600336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 141
Target Start/End: Complemental strand, 12121641 - 12121588
Alignment:
Q  88 tctctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgaca 141  Q
    ||||| ||| |||| ||||||||||||| ||| ||||||||| |||||||||||    
T  12121641 tctcttagttgtgtgcatttttctaccacatgcttcactcccatctctgtgaca 12121588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Original strand, 546846 - 546882
Alignment:
Q  106 ttttctaccatatgtttcactcccttctctgtgacat 142  Q
    ||||||| || ||||||||||||||||||||||||||    
T  546846 ttttctagcacatgtttcactcccttctctgtgacat 546882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 6e-18; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 9 - 139
Target Start/End: Original strand, 19632275 - 19632405
Alignment:
Q  9 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 108  Q
    |||||||||||||||||||||| ||||| || ||| ||||||  ||| ||| ||| |||| | ||||||||||| ||| ||  ||||| || | || |||    
T  19632275 atactagcaaagaaggcatccatgacgcaagcagagtttcctagttttgtcacttgaatgaatatcccccaaataaatctccttcagttgtttgcagttt 19632374  T
Q  109 tctaccatatgtttcactcccttctctgtga 139  Q
    |||||||  ||||||||||||||||||||||    
T  19632375 tctaccacgtgtttcactcccttctctgtga 19632405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 6589367 - 6589308
Alignment:
Q  156 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcacttt 215  Q
    ||||||||||||||||||||||||||||||||||||||| || | | |||||||||||||    
T  6589367 tgacaagttcaacacctccagcatgggaactacaaagttcattccaagtagcttcacttt 6589308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 139
Target Start/End: Complemental strand, 6594861 - 6594739
Alignment:
Q  17 aaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccat 116  Q
    ||||||||||||| ||||||||||||| || |||  ||||||| ||||||||  || ||| |||||  |||||||||| | |||| || ||||||||||     
T  6594861 aaagaaggcatccccgacgcgagaagagttccctaatttcgtcacttaaatgacaacccctcaaatacatttctctcaattgtgtgcagttttctaccac 6594762  T
Q  117 atgtttcactcccttctctgtga 139  Q
    ||||||  |||||| ||||||||    
T  6594761 atgtttggctccctcctctgtga 6594739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 9 - 144
Target Start/End: Complemental strand, 6589586 - 6589451
Alignment:
Q  9 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 108  Q
    ||||||| ||||| |||||||| || | ||||||| || |||  ||| ||| |||||||| | |||||||| || ||| |||   |||||||| || |||    
T  6589586 atactagtaaagatggcatccatgatgggagaagatttccctagttttgtcacttaaatgaatatcccccagataaatctcttgaagtcgtgtgcagttt 6589487  T
Q  109 tctaccatatgtttcactcccttctctgtgacataa 144  Q
    ||||||| |||||||||||||| ||| |||||||||    
T  6589486 tctaccacatgtttcactccctcctccgtgacataa 6589451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 6394700 - 6394833
Alignment:
Q  9 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 108  Q
    ||||||||||| | |||||||||||||| | |  | || ||| |||||||| |||| ||  | ||||||||||| ||| ||||||| | |||| || |||    
T  6394700 atactagcaaatacggcatccacgacgcaatagaagttccctattttcgtcacttacatcaatatcccccaaattaatctctctcaattgtgtgcagttt 6394799  T
Q  109 tctaccatatgtttcactcccttctctgtgacat 142  Q
    ||||||| ||||| ||| ||||| ||||||||||    
T  6394800 tctaccacatgttccacacccttttctgtgacat 6394833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 130
Target Start/End: Complemental strand, 7994433 - 7994324
Alignment:
Q  21 aaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttttctaccatatgt 120  Q
    |||||||||  |||||||||||| || ||| |||| ||| |||| ||| |||||||| |||| ||| ||| ||||| | || || |||||||||| ||||    
T  7994433 aaggcatccgtgacgcgagaagagttccctatttttgtcacttatatgaaaatcccctaaataaatctctttcagttgcgtgcagttttctaccacatgt 7994334  T
Q  121 ttcactccct 130  Q
    ||||||||||    
T  7994333 ttcactccct 7994324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 142
Target Start/End: Original strand, 14820529 - 14820662
Alignment:
Q  9 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 108  Q
    ||||||||||||| | |||||||||||||| | || ||||||  ||| |   |||||||| ||  || |||||| ||| ||||||||  |||| || |||    
T  14820529 atactagcaaagatgacatccacgacgcgatatgagtttcctaattttgagacttaaatgaaaccccgccaaattaatctctctcagctgtgtgcagttt 14820628  T
Q  109 tctaccatatgtttcactcccttctctgtgacat 142  Q
    | ||||| ||||||||| ||||||||||||||||    
T  14820629 tttaccacatgtttcacacccttctctgtgacat 14820662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 9 - 140
Target Start/End: Complemental strand, 10580000 - 10579869
Alignment:
Q  9 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttt-tcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacattt 107  Q
    |||||||||||||||||||||| ||||| ||||||||  ||| ||| || || |||||||  |||||  |||| | ||| ||||| ||| |||| || ||    
T  10580000 atactagcaaagaaggcatccatgacgcaagaagaatcccctatttatcctc-cttaaatctaaatcatccaagtaaatctctctaagttgtgtgcagtt 10579902  T
Q  108 ttctaccatatgtttcactcccttctctgtgac 140  Q
    |||||||| |||||| |||||||||| ||||||    
T  10579901 ttctaccacatgtttaactcccttctttgtgac 10579869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 6416021 - 6416080
Alignment:
Q  156 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcacttt 215  Q
    |||||||||||||||||||||  |||||||||||||||  || | |||||||||||||||    
T  6416021 tgacaagttcaacacctccaggttgggaactacaaagtccattccatgtagcttcacttt 6416080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 6432216 - 6432275
Alignment:
Q  156 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcacttt 215  Q
    ||||||||||||||||| |||| |||||||| ||||||| || | |||||||||||||||    
T  6432216 tgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttt 6432275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 6394919 - 6394978
Alignment:
Q  156 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcacttt 215  Q
    ||||||||||||||||||||||  ||||||| ||||||| || | |||||| ||||||||    
T  6394919 tgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacttt 6394978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Original strand, 6410061 - 6410120
Alignment:
Q  156 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcacttt 215  Q
    |||| |||||||||||| |||| |||||||| ||||||| || | |||||||||||||||    
T  6410061 tgactagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcacttt 6410120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 144
Target Start/End: Complemental strand, 6603368 - 6603330
Alignment:
Q  106 ttttctaccatatgtttcactcccttctctgtgacataa 144  Q
    |||||||||| |||||||||||| |||||||||||||||    
T  6603368 ttttctaccacatgtttcactcctttctctgtgacataa 6603330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 94
Target Start/End: Original strand, 6423053 - 6423138
Alignment:
Q  9 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctca 94  Q
    |||||||||||||||||||||||||  | ||| || |||| | |||| ||| |||| ||| ||||| ||||||| ||| |||||||    
T  6423053 atactagcaaagaaggcatccacgatccaagatgagtttcttatttttgtcacttacatgaaaatctcccaaataaatctctctca 6423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 156 - 213
Target Start/End: Complemental strand, 6594650 - 6594593
Alignment:
Q  156 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcact 213  Q
    |||||||| ||||||||||||  ||||||||| |||||| || | |||||||||||||    
T  6594650 tgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcact 6594593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 6432086 - 6432130
Alignment:
Q  98 gtgtacatttttctaccatatgtttcactcccttctctgtgacat 142  Q
    |||| ||||||||||||| | ||||||||||||||| ||||||||    
T  6432086 gtgtgcatttttctaccacaagtttcactcccttctgtgtgacat 6432130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 90 - 142
Target Start/End: Complemental strand, 6585419 - 6585367
Alignment:
Q  90 tctcagtcgtgtacatttttctaccatatgtttcactcccttctctgtgacat 142  Q
    ||||||| |||| ||  ||||||||| |||||||| |||||||||||||||||    
T  6585419 tctcagttgtgtgcaaatttctaccacatgtttcagtcccttctctgtgacat 6585367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 6597156 - 6597120
Alignment:
Q  14 agcaaagaaggcatccacgacgcgagaagaatttcct 50  Q
    ||||||||||||||||| ||||| |||||||||||||    
T  6597156 agcaaagaaggcatccatgacgcaagaagaatttcct 6597120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 9 - 142
Target Start/End: Complemental strand, 15092414 - 15092281
Alignment:
Q  9 atactagcaaagaaggcatccacgacgcgagaagaatttcctcttttcgtctcttaaatgcaaatcccccaaatgaatttctctcagtcgtgtacatttt 108  Q
    ||||||||||| | ||||||||||||||||||| | ||||||  ||| ||| |||| ||| | || || ||||| ||| ||||||| | |||| || |||    
T  15092414 atactagcaaatatggcatccacgacgcgagaatagtttcctagttttgtcacttacatggatataccgcaaattaatctctctcaattgtgtgcagttt 15092315  T
Q  109 tctaccatatgtttcactcccttctctgtgacat 142  Q
    |||| || |||||||||||||   ||||||||||    
T  15092314 tctagcacatgtttcactcccacttctgtgacat 15092281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 156 - 215
Target Start/End: Complemental strand, 13470776 - 13470717
Alignment:
Q  156 tgacaagttcaacacctccagcatgggaactacaaagttgatactatgtagcttcacttt 215  Q
    |||||||||||||||||||||  ||||||| |||||||| || | | |||||||||||||    
T  13470776 tgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcacttt 13470717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 103 - 142
Target Start/End: Complemental strand, 51113950 - 51113911
Alignment:
Q  103 catttttctaccatatgtttcactcccttctctgtgacat 142  Q
    ||||||||||||| ||| ||||||||||||||||||||||    
T  51113950 catttttctaccacatgcttcactcccttctctgtgacat 51113911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 19468544 - 19468505
Alignment:
Q  155 ctgacaagttcaacacctccagcatgggaactacaaagtt 194  Q
    ||||||| ||||||||||||||| ||||||||||||||||    
T  19468544 ctgacaacttcaacacctccagcttgggaactacaaagtt 19468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 142
Target Start/End: Complemental strand, 45245251 - 45245215
Alignment:
Q  106 ttttctaccatatgtttcactcccttctctgtgacat 142  Q
    |||||||||| ||||||||||||||| ||||||||||    
T  45245251 ttttctaccacatgtttcactcccttatctgtgacat 45245215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University