View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1499_low_61 (Length: 234)
Name: NF1499_low_61
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_61 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 35482016 - 35481800
Alignment:
| Q |
18 |
attgtcttgcttatttgtattacagacaaagtaaggagaataagaatccttctgatccaagaactgcttttcttcaacaagcgttgagtgctgtagagtc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35482016 |
attgtcttgcttatttgtattacagacaaagtaaggagaataagaatccttctgatccaagaactgcatttcttcaacaagcgttgagtgctgtagagtc |
35481917 |
T |
|
| Q |
118 |
tgataaagctagaaacgtgattttggaggagctaaatggaaaggctgaagaggaggaagttgaagatgttgtattaaaagtacctgttaatgtggtgaga |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35481916 |
tgataaagctagaaacgtgattttggaggagttgaatggaaaggctgaagaggagaaggttgaagatgttgtattaaaagtacctgttaatgtggtgaga |
35481817 |
T |
|
| Q |
218 |
ttgaagattggtgaagt |
234 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35481816 |
ttgaagattggtgaagt |
35481800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University