View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_63 (Length: 227)
Name: NF1499_low_63
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_63 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 40265814 - 40265624
Alignment:
| Q |
1 |
ccattgtctgcttcggtctctgtggtaggacttaagagaattgaatgggcacttccgtttggaacttccttgactgttgttggtgaggtaatctaatcag |
100 |
Q |
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| T |
40265814 |
ccattgtctgcttcggtctctgtggtaggacttaagagaattgaatgggcacttccgtttggaacttccttgactgttgttggtgaggtaatctaatcag |
40265715 |
T |
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| Q |
101 |
tttcaagaatgcagttagttttctatatattacataatttcagtatgattagtattttttgagtgttgcaaagtagatttctaataggttc |
191 |
Q |
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| T |
40265714 |
tttcaagaatgcagttagttttctatatattacataatttcagtatgattagtattttttgagtgttgcaaagtagatttctaataggttc |
40265624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 105
Target Start/End: Complemental strand, 40257056 - 40256983
Alignment:
| Q |
32 |
ttaagagaattgaatgggcacttccgtttggaacttccttgactgttgttggtgaggtaatctaatcagtttca |
105 |
Q |
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| T |
40257056 |
ttaaaagaattgaacgggtacttccagttggaacttccttgactgttgttggtgaggtaatctaattagtttca |
40256983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 34 - 179
Target Start/End: Complemental strand, 40271889 - 40271743
Alignment:
| Q |
34 |
aagagaattgaatgggcacttccgtttggaacttccttgactgttgttggtgaggtaatctaatcagtttcaagaatgcagttagtttt---ctatatat |
130 |
Q |
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| T |
40271889 |
aagaggattgaacgggtacttccggttggaacttccttaactgttgttggtcaggtaatctaattagtttgaagcactgagttagttttatactatatag |
40271790 |
T |
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| Q |
131 |
tacataatttcagtatgattagtattttttgagtgttgcaaagtagatt |
179 |
Q |
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| T |
40271789 |
tacataatttcattataattggca--tttgaagtgttgcaaagtagatt |
40271743 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 28 - 110
Target Start/End: Complemental strand, 40291698 - 40291616
Alignment:
| Q |
28 |
ggacttaagagaattgaatgggcacttccgtttggaacttccttgactgttgttggtgaggtaatctaatcagtttcaagaat |
110 |
Q |
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| T |
40291698 |
ggactcaagagaattgaacgggtacttctggttggaacttccttgaatgttgttggtgaggtaatttaattactttcaagaat |
40291616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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