View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1499_low_65 (Length: 212)
Name: NF1499_low_65
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_65 |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 5e-95; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 5250052 - 5250231
Alignment:
| Q |
18 |
tgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcct |
117 |
Q |
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| T |
5250052 |
tgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtgaatacttcactgagattaacactaatcct |
5250151 |
T |
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| Q |
118 |
ggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgcattctctg |
197 |
Q |
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| T |
5250152 |
ggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgcattctctg |
5250231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 5276488 - 5276316
Alignment:
| Q |
18 |
tgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcct |
117 |
Q |
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||||||||||||||||||||||||||||| |||| ||||||||| ||||||||| |||| ||||||||| ||||||||||||||||||||||||||||| |
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| T |
5276488 |
tgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttaggaataagtgaatacttcactgagattaacactaatcct |
5276389 |
T |
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| Q |
118 |
ggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgca |
190 |
Q |
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| T |
5276388 |
ggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgca |
5276316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 5272509 - 5272337
Alignment:
| Q |
18 |
tgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcct |
117 |
Q |
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| T |
5272509 |
tgatttgaggattgttagtgatgctaatatgttttacattgaaactattttgaagcatttgggaattagtgaatgcttctcagagattaactctaatcct |
5272410 |
T |
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| Q |
118 |
ggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgca |
190 |
Q |
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| T |
5272409 |
ggttatgttaatcaagaaggaagagttagaatttcaccttaccatgatttcaataaggcttcacatggttgca |
5272337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 18 - 190
Target Start/End: Original strand, 5269272 - 5269444
Alignment:
| Q |
18 |
tgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcct |
117 |
Q |
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| T |
5269272 |
tgatttgaggattgttagcgatgctaatacgattttcattgacacaattttgaagcatttgggaattagtgaatgcttctctgagattaacaccaatcct |
5269371 |
T |
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| Q |
118 |
ggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataaggattcacatggttgca |
190 |
Q |
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||||||||||||||| |||||||||||| | || | ||||| ||||| ||||| || | ||| |||||||||| |
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| T |
5269372 |
ggttatgttaatcaagaaggaagattaaaagttatgccttatcatgacttcaacaaagcttctcatggttgca |
5269444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 49 - 190
Target Start/End: Original strand, 14944462 - 14944601
Alignment:
| Q |
49 |
tttttcattgaaacaattttgaagaatttgggaataagtaaata-cttcactgagattaacactaatcctggttatgttaatcaacaaggaagattaaga |
147 |
Q |
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|||| ||||||||| ||||||||| |||||||||||||| |||| |||| | |||||||||||||||| ||||||||||||| || |||| ||| ||||| |
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| T |
14944462 |
ttttacattgaaactattttgaagcatttgggaataagtgaatatcttctcagagattaacactaatcttggttatgttaatgaagaaggtagactaaga |
14944561 |
T |
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| Q |
148 |
attttaccttaccatgatttcaataaggattcacatggttgca |
190 |
Q |
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|| | ||| |||| | ||||| |||| |||||||||||||| |
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| T |
14944562 |
atgtcaccatacc---acttcaacaaggcttcacatggttgca |
14944601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 26314880 - 26314728
Alignment:
| Q |
18 |
tgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcct |
117 |
Q |
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||||||||||||||| |||||||| || |||||||||||||| |||||| | ||| | || ||||| || ||| ||| | ||||||||||||||||| |
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| T |
26314880 |
tgatttgaggattgtaagtgatgcaaacacatttttcattgagacaattctaaagcactttggaattagggaatgtttctcggagattaacactaatcca |
26314781 |
T |
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| Q |
118 |
ggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaa |
170 |
Q |
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||||||||| || || |||||||||| |||||||| |||| | ||||| |||| |
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| T |
26314780 |
ggttatgttgatgaagaaggaagattgagaattttgcctttctatgatctcaa |
26314728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 18 - 174
Target Start/End: Complemental strand, 43110416 - 43110263
Alignment:
| Q |
18 |
tgatttgaggattgttagtgatgctaatacatttttcattgaaacaattttgaagaatttgggaataagtaaatacttcactgagattaacactaatcct |
117 |
Q |
| |
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||||||||||||||| |||||||| || || ||||||||||| |||||| ||||| |||| || || || ||| ||| | ||||||||||||||||| |
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| T |
43110416 |
tgatttgaggattgtaagtgatgcaaacacgtttttcattgagacaattctgaagcattttggtattagggaatgtttctcagagattaacactaatcca |
43110317 |
T |
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| Q |
118 |
ggttatgttaatcaacaaggaagattaagaattttaccttaccatgatttcaataag |
174 |
Q |
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||||||||| || ||||||| || |||||||| |||||||||||| |||||||| |
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| T |
43110316 |
ggttatgttgat---gaaggaaggttgagaattttgccttaccatgatctcaataag |
43110263 |
T |
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