View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1499_low_8 (Length: 508)
Name: NF1499_low_8
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 337; Significance: 0; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 15 - 499
Target Start/End: Complemental strand, 5510415 - 5509918
Alignment:
| Q |
15 |
aaatcaaccaactagtttgtttttgctttgatgtcaaaaccggtaaaaagtgtctggtaaaaaatttccaa----gtccactagtcagggtaaattttga |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| ||||||| || || || |||||||||||||||||||||| |
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| T |
5510415 |
aaatcaaccaactagtttgtttttgctttgatgtcaaaaccagtaaaaagggtctgataaaaaacgtctaattaagtacactagtcagggtaaattttga |
5510316 |
T |
|
| Q |
111 |
tgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaatacaagaggttnnnnnnnnnnnnnnnngtaataaattcagtaattaaat |
210 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5510315 |
tgtgaataatgcttgaaggaagctcttagcctacaccacaagtaaagggaatacaagaggttaaaaaaacagaaaaaagtaataaattcagtaattaaat |
5510216 |
T |
|
| Q |
211 |
aatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattag |
310 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5510215 |
aatagccaccttacctcttcttcaccaacggtaatcacggccacttcaaggtcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattag |
5510116 |
T |
|
| Q |
311 |
cagcaagtggttttacttctagatcatctcctaacacataaaatgctgctctcttcacaaatcctacagcaccttctcttgggtcgagttcagtcacgct |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5510115 |
cagcaagtggttttacttctagatcatctcctaacacataaaatgctgctctcttcacaaatcctacagcaccttctcttgggtcaagttcagtcacgct |
5510016 |
T |
|
| Q |
411 |
tcttcgattaacaattgatacatttgaattagaaatcacttcctctattgtattataatca---------tcattgtgatgaataccataataataat |
499 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
5510015 |
tcttcgattaacaattgatacatgtgaattagaaatcacttcctctattgtattataatcatcatcatcatcattgtgatgaataccataataataat |
5509918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 206 - 374
Target Start/End: Complemental strand, 5489594 - 5489429
Alignment:
| Q |
206 |
taaataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaaga |
305 |
Q |
| |
|
||||| |||||||| |||||||| ||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||| ||||||||| ||||| |
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|
| T |
5489594 |
taaatgatagccacattacctcagcttcaccaatgct---caccttcacttcaagatcatcaagaggaaggcttaatactttcaaatatgaaagcaaaga |
5489498 |
T |
|
| Q |
306 |
attagcagcaagtggttttacttctagatcatctcctaacacataaaatgctgctctcttcacaaatcc |
374 |
Q |
| |
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|||||||| |||||||||||| | |||||||||||||| |||| |||| |||||||||||||||||| |
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|
| T |
5489497 |
attagcagaaagtggttttacatttagatcatctcctataccatataatgttgctctcttcacaaatcc |
5489429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 208 - 369
Target Start/End: Original strand, 5981058 - 5981219
Alignment:
| Q |
208 |
aataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaat |
307 |
Q |
| |
|
|||||||||||| |||||||| ||||||||||| | ||||| ||||||||||||||||||| |||| ||| |||||||||| ||||||||| |||||| |
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|
| T |
5981058 |
aataatagccactttacctcagcttcaccaatgcttatcaccttcacttcaagatcatcaaggggaaagctcaattctttcaaatatgaaagccaagaat |
5981157 |
T |
|
| Q |
308 |
tagcagcaagtggttttacttctagatcatctcctaacacataaaatgctgctctcttcaca |
369 |
Q |
| |
|
|||||| ||||| |||||||| |||||||||||||| ||||| ||||||| |||||||||| |
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|
| T |
5981158 |
tagcagaaagtgattttacttttagatcatctcctacaacatataatgctggtctcttcaca |
5981219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 79 - 391
Target Start/End: Original strand, 5446022 - 5446333
Alignment:
| Q |
79 |
tttccaagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaatacaagaggttnnnnnn |
178 |
Q |
| |
|
||||| ||||||||||||| |||||| |||| ||| |||||||||| ||||||||||||||||||||| ||||||||| ||||| |||||||| |
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|
| T |
5446022 |
tttcccagtccactagtcaaggtaaactttgctgtcaagaatgctttaaggaagctcaaagcctacacaacaagtaaaaggaatcaaagaggttataaaa |
5446121 |
T |
|
| Q |
179 |
nnnnnnnnnngtaataaattcagtaattaaataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggct |
278 |
Q |
| |
|
|| |||||||| |||| |||||||| ||| |||||||| ||||||||||| | ||||| ||||| |||||| |||| || ||||| |
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|
| T |
5446122 |
acgaaaaaaatta-taaattcactaataaaataatatccaacttacctcggcttcaccaatgcttatcacctccacttgaagatcttcaatggggaggct |
5446220 |
T |
|
| Q |
279 |
taattctttcagatatgaaagaaaagaattagcagcaagtggttttacttctagatcatctcctaacacataaaatgctgctctcttcacaaatcctaca |
378 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||||| ||||| |||||||| |||||||||||||| |||| |||||| ||| | ||||||||| ||| |
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|
| T |
5446221 |
taattctttcaaatataaaaggaaagaattagcagaaagtgattttacttttagatcatctcctacaccatataatgctagtctttgcacaaatcccaca |
5446320 |
T |
|
| Q |
379 |
gcaccttctcttg |
391 |
Q |
| |
|
||||||| |||| |
|
|
| T |
5446321 |
acaccttcccttg |
5446333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 214 - 327
Target Start/End: Original strand, 5435516 - 5435629
Alignment:
| Q |
214 |
agccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcag |
313 |
Q |
| |
|
|||||| |||||||| ||||||||||| | ||||| ||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||| || |
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|
| T |
5435516 |
agccacattacctcagcttcaccaatgcttatcaccttcacttcaagatcatcaagaggaagacttaattctttcaaatataaaaggaaagaattagtag |
5435615 |
T |
|
| Q |
314 |
caagtggttttact |
327 |
Q |
| |
|
||||||||||||| |
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|
| T |
5435616 |
aaagtggttttact |
5435629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 208 - 374
Target Start/End: Original strand, 5995981 - 5996147
Alignment:
| Q |
208 |
aataatagccaccttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaat |
307 |
Q |
| |
|
|||| ||| ||| |||||||| ||||||||||| | ||||| |||||||||||||| |||| |||| ||| |||||||||| ||||||||| |||||| |
|
|
| T |
5995981 |
aatagtagtcactttacctcagcttcaccaatgcttatcacattcacttcaagatcaacaaggggaaagctcaattctttcaaatatgaaaggcaagaat |
5996080 |
T |
|
| Q |
308 |
tagcagcaagtggttttacttctagatcatctcctaacac-ataaaatgctgctctcttcacaaatcc |
374 |
Q |
| |
|
|||||| || |||||||||| ||||||||||||| |||| ||| ||||| | ||||||||||||||| |
|
|
| T |
5996081 |
tagcagaaaaaggttttacttttagatcatctcct-acactatataatgccggtctcttcacaaatcc |
5996147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 221 - 374
Target Start/End: Original strand, 5457409 - 5457562
Alignment:
| Q |
221 |
ttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcagcaagtgg |
320 |
Q |
| |
|
|||||||| ||||||||||| | ||||| || |||||||||| ||||||| ||||||||||||||||| | || |||| ||||||||||||| | |||| |
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|
| T |
5457409 |
ttacctcagcttcaccaatgcttatcacattcgcttcaagatcgtcaagagaaaggcttaattctttcaaacataaaaggaaagaattagcagaatgtgg |
5457508 |
T |
|
| Q |
321 |
ttttacttctagatcatctccta-acacataaaatgctgctctcttcacaaatcc |
374 |
Q |
| |
|
|||||||| |||||||| | ||| ||| ||| |||||||||||||| |||||||| |
|
|
| T |
5457509 |
ttttacttttagatcattttctacaca-atataatgctgctctctttacaaatcc |
5457562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 84 - 162
Target Start/End: Complemental strand, 5489708 - 5489630
Alignment:
| Q |
84 |
aagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaat |
162 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||||||||||| |||||||||| |
|
|
| T |
5489708 |
aagtccactagtcaaggtaaatcttgatgtcaagaatgctccaaggaagctcaaagcctacaccacaattaaagggaat |
5489630 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 221 - 387
Target Start/End: Complemental strand, 5632435 - 5632269
Alignment:
| Q |
221 |
ttacctcatcttcaccaatggtaatcacggtcacttcaagatcatcaagaggaaggcttaattctttcagatatgaaagaaaagaattagcagcaagtgg |
320 |
Q |
| |
|
|||||||| ||||||| ||| | ||||| ||| ||| ||||||||||| || |||||||||||||||| |||||||| ||||| || ||| |||||| |
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|
| T |
5632435 |
ttacctcagcttcaccgatgcttatcaccttcatttccagatcatcaagggggaggcttaattctttcaaatatgaaatgcaagaactaccagaaagtgg |
5632336 |
T |
|
| Q |
321 |
ttttacttctagatcatctcctaacacataaaatgctgctctcttcacaaatcctacagcaccttct |
387 |
Q |
| |
|
||||||| |||||||||||| | |||| |||| ||| ||||||||||||| | | |||||||| |
|
|
| T |
5632335 |
ttttactgttagatcatctccaatagcatataatgttgcattcttcacaaatcccataacaccttct |
5632269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 162
Target Start/End: Original strand, 5457280 - 5457354
Alignment:
| Q |
88 |
ccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaagtaaagggaat |
162 |
Q |
| |
|
|||||||| | ||||||| ||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
5457280 |
ccactagttaaggtaaatcttgatgtcaagaatgctccaaggaagctcaaagcctacaccgcaattaaagggaat |
5457354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 5435389 - 5435456
Alignment:
| Q |
84 |
aagtccactagtcagggtaaattttgatgtgaagaatgcttgaaggaagctcaaagcctacaccacaa |
151 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||| ||||| || ||||||||||||||||| |
|
|
| T |
5435389 |
aagtccactagtcaaggtaaatcttgatgtcaagaatgtcccaaggatgcccaaagcctacaccacaa |
5435456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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