View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1499_low_9 (Length: 495)
Name: NF1499_low_9
Description: NF1499
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1499_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 11 - 477
Target Start/End: Complemental strand, 52563452 - 52562984
Alignment:
| Q |
11 |
cagagattgagtttaatagaagaaattacagtcatacaatatgagcaactaagacttgaattatgagaagaggtttctatatttgtacttcaaatgagat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563452 |
cagagattgagtttaatagaagaaattacagtcatacaatatgagcaactaagacttgaattatgagaagaggtttctatatttgtacttcaaatgagat |
52563353 |
T |
|
| Q |
111 |
tgcttcaagttgagagaatatacaaaaatccaacaacaacaacaa---aaatagttaattttcaaacaagagcagtaagcatatatatgaaggaaaatac |
207 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563352 |
tgcttcaagttgagagaatatataaaaatccaacaacaacaacaacaaaaatagttaattttcaaacaagagcagtaagcatatatatgaaggaaaatac |
52563253 |
T |
|
| Q |
208 |
gagggaaaaaatggtaattactgaaatattactaagacattcacgtgagttgatgagagacaaagaagacaaataaaaaagacaaaatatatggagtgtg |
307 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563252 |
gagggaaaaaatgttaattactgaaatattactaagacattcacgtgagttgatgagagacaaagaagacaaataaaaaagacaaaatatatggagtgtg |
52563153 |
T |
|
| Q |
308 |
tggaatgctactacgctgaccccatacatacgtatgacaaaagcttatccgcagaaagtagttttttacttttcatcactgcattactactaaaatatcc |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563152 |
tggaatgctactacgctgaccccatacatacgtatgacaaaagcttatccgcagaaagtagttttttacttttcatcactgcattactactaaaatatcc |
52563053 |
T |
|
| Q |
408 |
tcactgtaaagttgaaaaaatgtccactttttcatattcggtggtgggactctggaagaacgatgtgaaa |
477 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52563052 |
tcactgtaaagttgaaaaaatgtccac-ttttcatattcggtggtgggactctggaagaacgatgtgaaa |
52562984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University