View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15000_high_1 (Length: 834)

Name: NF15000_high_1
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15000_high_1
NF15000_high_1
[»] chr4 (15 HSPs)
chr4 (7-831)||(21833972-21834804)
chr4 (42-457)||(53761408-53761816)
chr4 (236-385)||(570478-570624)
chr4 (254-387)||(547038-547174)
chr4 (210-300)||(371135-371225)
chr4 (263-311)||(1600623-1600671)
chr4 (266-309)||(570737-570780)
chr4 (254-457)||(1548264-1548468)
chr4 (474-536)||(1548557-1548619)
chr4 (269-307)||(3438419-3438457)
chr4 (345-395)||(3438498-3438548)
chr4 (471-528)||(566101-566158)
chr4 (472-525)||(644746-644799)
chr4 (554-595)||(1600295-1600336)
chr4 (472-525)||(12121588-12121641)
[»] chr7 (7 HSPs)
chr7 (7-457)||(10614648-10615101)
chr7 (101-378)||(10169818-10170095)
chr7 (101-378)||(10177343-10177620)
chr7 (122-229)||(10167383-10167490)
chr7 (197-458)||(15091935-15092196)
chr7 (471-604)||(15092281-15092414)
chr7 (634-663)||(10614398-10614427)
[»] chr3 (7 HSPs)
chr3 (7-457)||(13470323-13470776)
chr3 (7-457)||(51764034-51764484)
chr3 (101-311)||(514407-514623)
chr3 (212-381)||(51113580-51113749)
chr3 (687-729)||(46926701-46926743)
chr3 (471-510)||(51113911-51113950)
chr3 (634-663)||(51764737-51764766)
[»] chr1 (4 HSPs)
chr1 (101-458)||(19468187-19468544)
chr1 (210-307)||(9586844-9586941)
chr1 (210-307)||(9581276-9581373)
chr1 (7-151)||(33160874-33161018)
[»] chr6 (31 HSPs)
chr6 (11-457)||(6416021-6416470)
chr6 (7-457)||(6588920-6589367)
chr6 (199-457)||(6426566-6426824)
chr6 (122-457)||(6410061-6410402)
chr6 (199-457)||(6394919-6395177)
chr6 (187-457)||(6432216-6432486)
chr6 (254-457)||(6594447-6594650)
chr6 (101-453)||(14820752-14821107)
chr6 (210-385)||(10579533-10579708)
chr6 (210-458)||(7119211-7119459)
chr6 (210-458)||(7131689-7131937)
chr6 (101-311)||(6602887-6603103)
chr6 (172-457)||(6423272-6423557)
chr6 (263-457)||(7994032-7994226)
chr6 (474-604)||(19632275-19632405)
chr6 (474-596)||(6594739-6594861)
chr6 (198-311)||(19632637-19632750)
chr6 (326-458)||(6402914-6403046)
chr6 (724-808)||(14800856-14800940)
chr6 (469-604)||(6589451-6589586)
chr6 (471-604)||(6394700-6394833)
chr6 (483-592)||(7994324-7994433)
chr6 (211-384)||(8913783-8913955)
chr6 (471-604)||(14820529-14820662)
chr6 (326-458)||(6585150-6585282)
chr6 (271-311)||(9411556-9411596)
chr6 (9-73)||(8913659-8913723)
chr6 (469-507)||(6603330-6603368)
chr6 (164-229)||(6403164-6403229)
chr6 (519-604)||(6423053-6423138)
chr6 (62-151)||(6426860-6426949)
[»] chr5 (8 HSPs)
chr5 (7-152)||(28532074-28532219)
chr5 (685-805)||(28524911-28525035)
chr5 (114-311)||(32267676-32267879)
chr5 (263-311)||(41889401-41889449)
chr5 (263-311)||(41901385-41901433)
chr5 (197-297)||(20477866-20477966)
chr5 (210-310)||(28525213-28525313)
chr5 (345-453)||(41889486-41889594)
[»] chr2 (3 HSPs)
chr2 (263-381)||(1037511-1037632)
chr2 (176-311)||(32785535-32785670)
chr2 (326-384)||(43277373-43277431)
[»] chr8 (4 HSPs)
chr8 (175-309)||(17627818-17627952)
chr8 (237-311)||(18315094-18315168)
chr8 (237-311)||(32151502-32151576)
chr8 (238-309)||(17636219-17636290)


Alignment Details
Target: chr4 (Bit Score: 697; Significance: 0; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 697; E-Value: 0
Query Start/End: Original strand, 7 - 831
Target Start/End: Original strand, 21833972 - 21834804
Alignment:
Q  7 tctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgttt 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  21833972 tctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgtgctttgttt 21834071  T
Q  107 acacttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattgggagtaagagtggagggaattctgaatctttggtggattttggtgtgt 206  Q
    ||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21834072 acacttgttaagaactgtcattcgcttagtgagatcaaaatggaacatattgggagtaagagtcgagggaattctgaatctttggtggattttggtgtgt 21834171  T
Q  207 acactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttga 306  Q
    || |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  21834172 accctcaattaaagtctctctttttgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttacagctgcttga 21834271  T
Q  307 tttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaag 406  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834272 tttgacttcttccacacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaag 21834371  T
Q  407 ctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtcaggtgttggacgttatgtcacagagaagggagtgaaacatatggtagaaa 506  Q
    |||||||||||||||||||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21834372 ctacatagtatcaactttgtagttcccaagctggaggtgttggacttgtcaggtgttggacgttatgtcacagagaagggaatgaaacatatggtagaaa 21834471  T
Q  507 aatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcgtggatgccttctttgctagtatcc 606  Q
     |||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834472 gatgtacacaactgagagaaattaatttgggggatttgcatttaagtgacgaaaagaggaaattcttctcgcgtcgtggatgccttctttgctagtatcc 21834571  T
Q  607 tgtaagtagtttttgttttaagattttatgtcaacttacaaatgtgcatttactcattgcttgataatttccaaagtatatataatgtacaatgtaatgc 706  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21834572 tgtaagt-gtttttgttttaagattttatgtcaacttacaaatgtgcatttactcattgcttgataatttccaaagtatatataatgtacaatgtaatgc 21834670  T
Q  707 aagcggttgaatgtcgtgttgttaaatgtgtgtgtacatagtttta-gttttattttt--------accatcgttgtactctcaaataccacctccacca 797  Q
    ||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||||         |||||||||||||| |||||| |||||||||||    
T  21834671 aagcggttgaatgtcgtgttgttaaatgtgtgtgttcatagttttatgtttttttttttttttttatccatcgttgtactcccaaatagcacctccacca 21834770  T
Q  798 tttttgtactcaaaacgccgcttccacctatgct 831  Q
    ||||||||||||||||||||||||||||| ||||    
T  21834771 tttttgtactcaaaacgccgcttccacctttgct 21834804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 42 - 457
Target Start/End: Original strand, 53761408 - 53761816
Alignment:
Q  42 ttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgtttacacttgttaagaactgtcattcacttagtgagat 141  Q
    |||||||||||||| | ||||||||||||||| ||||| ||||| ||||  ||    | |||||| |||||| ||| ||||||| |||||||||||||||    
T  53761408 ttcttggtgatttggtgtccataaaccttagtcgttgttataagatcacaaaattggccttgtttgcacttgctaaaaactgtccttcacttagtgagat 53761507  T
Q  142 caaaatggaacgtattgggagtaagagtggagggaattctgaatctttggtggattttggtgtgtacactcaattaaagtctctctatctgggccgcaat 241  Q
    |||||||||| | || |||| | ||| || || |||||||||||||| | ||||  ||||||| ||| |||||||              || ||   |||    
T  53761508 caaaatggaaagaatagggaatgagattgtagagaattctgaatcttcgatggagcttggtgtataccctcaatt--------------tgtgcaataat 53761593  T
Q  242 tcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaat-------ttgcagctgcttgatttgacttcttccatacagatatcagaa 334  Q
    || ||||||| ||||||||  ||||||| |||||| |||||||||||||||       ||||| || |||||||| | ||||| |   |  |||||  ||    
T  53761594 tcttggttaagtgatgaaaacatcataacgtttgcatcaattttccccaatttgcaagttgcaactacttgatttaagttcttgcgatcgaatatctaaa 53761693  T
Q  335 ggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagtatcaactttgtagttccca 434  Q
    ||||||||  |||||||||||| ||||||||| |||| ||||||||||||| | |  ||||  | ||||||||||  | | || ||||||||||||||||    
T  53761694 ggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttagccgagtgttcaagagtgaagctaattggaatgaactttgtagttccca 53761793  T
Q  435 tgttggaggtgttgaacttgtca 457  Q
     | | |||| |||||||||||||    
T  53761794 agctagaggcgttgaacttgtca 53761816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 236 - 385
Target Start/End: Complemental strand, 570624 - 570478
Alignment:
Q  236 cgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttgacttcttccatacagatatcagaag 335  Q
    |||||| ||||||||| ||||||||  ||  ||||||||||||| |||||||||||||||||| | |||||||| | || || ||  |||||||| ||      
T  570624 cgcaatacatggttaagtgatgaaaacattttaatgtttgcttctattttccccaatttgcagatacttgatttaagttattgcaatcagatatccgata 570525  T
Q  336 gtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaactta 385  Q
    |||||||  ||||||||||   |||||||||  ||| |||||||||||||    
T  570524 gtatttgtcaagttttaag---atgttgtaaacttaggcatttgaactta 570478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 254 - 387
Target Start/End: Complemental strand, 547174 - 547038
Alignment:
Q  254 gatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttgacttcttc-catacagatatcagaag---gtatttgcgaagtt 349  Q
    |||||||| |||| ||||||| |||| || |||||||||||||| ||||||||||| | || ||  | || | ||||| ||||   ||||||| || |||    
T  547174 gatgaaagcatcaaaatgtttccttccatgttccccaatttgcaactgcttgatttaagttattgtcgta-acatatctgaagacagtatttgtgatgtt 547076  T
Q  350 ttaaggaaatgttgtaagattaagcatttgaacttatc 387  Q
    ||||||| |||||||||||| | |||||||||||||||    
T  547075 ttaaggagatgttgtaagataaggcatttgaacttatc 547038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 210 - 300
Target Start/End: Complemental strand, 371225 - 371135
Alignment:
Q  210 ctcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagct 300  Q
    |||||||||| ||||||||| |||  | ||||||||||||||  ||||||    | ||||||||||||||||||||||  |||||||||||    
T  371225 ctcaattaaaatctctctatttggctcacaattcatggttaagagatgaataccttataatgtttgcttcaattttcctgaatttgcagct 371135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 1600671 - 1600623
Alignment:
Q  263 atcataatgtttgcttcaattttccccaatttgcagctgcttgatttga 311  Q
    ||||||||||||||||| | ||| ||||||||||| |||||||||||||    
T  1600671 atcataatgtttgcttccaattttcccaatttgcaactgcttgatttga 1600623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 266 - 309
Target Start/End: Complemental strand, 570780 - 570737
Alignment:
Q  266 ataatgtttgcttcaattttccccaatttgcagctgcttgattt 309  Q
    |||||||||||||| ||||||||||||||||| || ||||||||    
T  570780 ataatgtttgcttccattttccccaatttgcaactacttgattt 570737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 457
Target Start/End: Original strand, 1548264 - 1548468
Alignment:
Q  254 gatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttgacttcttccatacagatatca---gaaggtatttgcgaagttt 350  Q
    |||||||  |||| ||| ||| |||| ||||||||||||||||| ||||||||||||| |  || ||     ||||||   ||||||||||| |||||||    
T  1548264 gatgaaaccatcaaaatattttcttcgattttccccaatttgcaactgcttgatttgattaattgcagtggcatatcagacgaaggtatttgtgaagttt 1548363  T
Q  351 taaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagta-tcaactttgtagttcccatgttggaggtgttga 449  Q
    ||||   ||||||||||||||  || ||||||||| |  || |||  ||||||||||||| | | | | ||||||| | ||||||   ||||||||||||    
T  1548364 taag---atgttgtaagattagacagttgaacttagctcgtagtttaaaagtgaagctactttggactgaactttgaaattcccaaactggaggtgttga 1548460  T
Q  450 acttgtca 457  Q
    ||||||||    
T  1548461 acttgtca 1548468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 474 - 536
Target Start/End: Original strand, 1548557 - 1548619
Alignment:
Q  474 tcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgg 536  Q
    ||||||||||||||||||||||||| | |||||| ||  | | ||||||||||||| ||||||    
T  1548557 tcacagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttgg 1548619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 269 - 307
Target Start/End: Original strand, 3438419 - 3438457
Alignment:
Q  269 atgtttgcttcaattttccccaatttgcagctgcttgat 307  Q
    |||||| |||| |||||||||||||||||||||||||||    
T  3438419 atgttttcttctattttccccaatttgcagctgcttgat 3438457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 3438498 - 3438548
Alignment:
Q  345 aagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgtt 395  Q
    |||||||||||| ||||||||||||||  |||||||||||| | |||||||    
T  3438498 aagttttaaggagatgttgtaagattagacatttgaacttagctggttgtt 3438548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 471 - 528
Target Start/End: Complemental strand, 566158 - 566101
Alignment:
Q  471 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaat 528  Q
    |||| ||||||||||||||||||||  |||| ||||| || |||| ||||||||||||    
T  566158 atgttacagagaagggagtgaaacacctggtggaaaactgcacacaactgagagaaat 566101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 525
Target Start/End: Complemental strand, 644799 - 644746
Alignment:
Q  472 tgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagaga 525  Q
    |||||| ||||| |||||||||||| |||| |||||||| |||| |||||||||    
T  644799 tgtcacggagaaaggagtgaaacatgtggttgaaaaatgcacacaactgagaga 644746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 554 - 595
Target Start/End: Complemental strand, 1600336 - 1600295
Alignment:
Q  554 gacgaaaagaggaaattcttctcgcgtcgtggatgccttctt 595  Q
    |||||||| ||||||||||||||| ||| |||||||||||||    
T  1600336 gacgaaaataggaaattcttctcgagtcatggatgccttctt 1600295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 472 - 525
Target Start/End: Original strand, 12121588 - 12121641
Alignment:
Q  472 tgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagaga 525  Q
    ||||||||||| ||||||||| ||| ||||||||||||| |||| ||| |||||    
T  12121588 tgtcacagagatgggagtgaagcatgtggtagaaaaatgcacacaactaagaga 12121641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 128; Significance: 1e-65; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 7 - 457
Target Start/End: Complemental strand, 10615101 - 10614648
Alignment:
Q  7 tctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgttt 106  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||  ||   ||||||| |    
T  10615101 tctgaatgatcaacatgttgtccaattgtcttcatttcttggtgatttgatgtccataaaccttagttgttgtgttaagctcacaaaattatctttgtat 10615002  T
Q  107 acacttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattgg---gagtaagagtggagggaattctgaatctttggtggattttggtg 203  Q
     ||||   ||||||||||| |  |||| |||| |||||||||||| | |||||   ||||| ||||| || ||||||||| || |||| ||| |||||||    
T  10615001 gcactcactaagaactgtcctctacttggtgaaatcaaaatggaaggaattgggaagagtacgagtgtagagaattctgattcattggcggagtttggtg 10614902  T
Q  204 tgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgct 303  Q
    | ||| |||||||||||||||||||| ||||    |||   |||||||  |||||| | || |||| ||||||||| | ||||||||||||||| |||||    
T  10614901 tataccctcaattaaagtctctctatttgggaaaaaatcagtggttaagcgatgaaggcattataaagtttgcttccaatttccccaatttgcaactgct 10614802  T
Q  304 tgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtg 403  Q
    |||||||| |  || ||  |   |||  |||||||||||  |||||||||||| |||||||||||||| ||||||||||||| |   |||| | ||||||    
T  10614801 tgatttgaatcgttgcaatctcttatatgaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtg 10614702  T
Q  404 aagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    ||||||| | | || ||| |||| |||||||   ||||||||||||||||||||    
T  10614701 aagctacttggaatgaacgttgttgttcccaatctggaggtgttgaacttgtca 10614648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 101 - 378
Target Start/End: Original strand, 10169818 - 10170095
Alignment:
Q  101 ttgtttacacttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattgggagtaagagtggagggaattctgaatctttggtggattttg 200  Q
    |||||| |||| |||| ||| |||| |||||||||||||||||||||||||  ||| ||||||||||||  ||  |||||||| ||||||  ||||||||    
T  10169818 ttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaaaatatagggagtaagagtttagacaattctgattctttgccggattttg 10169917  T
Q  201 gtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagct 300  Q
    |||| ||| ||||||| |||||||||||| |||    |||| ||||| |||  ||||||   |||||||||||| |||| ||||| || |||||| ||||    
T  10169918 gtgtataccctcaattgaagtctctctatttggcttacaatacatgggtaagggatgaacacatcataatgttttcttccatttttcctaatttgaagct 10170017  T
Q  301 gcttgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcattt 378  Q
    | |||||||||  |||| ||  || ||||| ||||| |||||  ||||||||||||  |||| ||| |||| ||||||    
T  10170018 gtttgatttgaactcttgcaatcacatatcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcattt 10170095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 101 - 378
Target Start/End: Original strand, 10177343 - 10177620
Alignment:
Q  101 ttgtttacacttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattgggagtaagagtggagggaattctgaatctttggtggattttg 200  Q
    |||||| |||| |||| ||| |||| |||||||||||||||||||||||||  ||| ||||||||||||  ||  |||||||| ||||||  ||||||||    
T  10177343 ttgtttgcactcgttaggaattgtccttcacttagtgagatcaaaatggaaaatatagggagtaagagtttagacaattctgattctttgccggattttg 10177442  T
Q  201 gtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagct 300  Q
    |||| ||| ||||||| |||||||||||| |||    |||| ||||| |||  ||||||   |||||||||||| |||| ||||| || |||||| ||||    
T  10177443 gtgtataccctcaattgaagtctctctatttggcttacaatacatgggtaagggatgaacacatcataatgttttcttccatttttcctaatttgaagct 10177542  T
Q  301 gcttgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcattt 378  Q
    | |||||||||  |||| ||  || ||||| ||||| |||||  ||||||||||||  |||| ||| |||| ||||||    
T  10177543 gtttgatttgaactcttgcaatcacatatcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcattt 10177620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 122 - 229
Target Start/End: Original strand, 10167383 - 10167490
Alignment:
Q  122 tgtcattcacttagtgagatcaaaatggaacgtattgggagtaagagtggagggaattctgaatctttggtggattttggtgtgtacactcaattaaagt 221  Q
    |||| |||||||||||||||||||||||||  ||| ||||||||||||  ||  |||||||| ||||||  |||||||||||| ||| ||||||| ||||    
T  10167383 tgtccttcacttagtgagatcaaaatggaaaatatagggagtaagagtttagacaattctgattctttgccggattttggtgtataccctcaattgaagt 10167482  T
Q  222 ctctctat 229  Q
    ||||||||    
T  10167483 ctctctat 10167490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 197 - 458
Target Start/End: Original strand, 15091935 - 15092196
Alignment:
Q  197 tttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgc 296  Q
    |||||||| ||| |||||||||||||||||||| |||  | |||||   |||||| ||||||||  |||| |||  ||||||| ||||||||||| ||      
T  15091935 tttggtgtataccctcaattaaagtctctctatttggctcacaattaccggttaagtgatgaaatcatcagaatacttgcttccattttccccaacttag 15092034  T
Q  297 agctgcttgatttgacttcttcc-atacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgtt 395  Q
    |||| |||||||||  |  || | ||| | |||||  |||||||||   |||||||||||||||||| |||| |||| |||||||||||| | || ||||    
T  15092035 agctacttgatttgggtcattgctata-acatatctcaaggtatttctcaagttttaaggaaatgttataagcttaaacatttgaacttaactggatgtt 15092133  T
Q  396 ataaagtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtcag 458  Q
      |  ||||| |||||| | || ||||||| |||||||  | ||||||||||||| |||||||    
T  15092134 taagtgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtcag 15092196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 471 - 604
Target Start/End: Original strand, 15092281 - 15092414
Alignment:
Q  471 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaatt 570  Q
    ||||||||||   ||||||||||||| || ||||||| || |||| | ||||||| ||| ||||| || || | ||| |||| ||| |||  |||||| |    
T  15092281 atgtcacagaagtgggagtgaaacatgtgctagaaaactgcacacaattgagagagattaatttgcggtatatccatgtaagtgacaaaactaggaaact 15092380  T
Q  571 cttctcgcgtcgtggatgccttctttgctagtat 604  Q
     ||||||||||||||||||| | |||||||||||    
T  15092381 attctcgcgtcgtggatgccatatttgctagtat 15092414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 663
Target Start/End: Complemental strand, 10614427 - 10614398
Alignment:
Q  634 atgtcaacttacaaatgtgcatttactcat 663  Q
    ||||||||||||||||||||||||||||||    
T  10614427 atgtcaacttacaaatgtgcatttactcat 10614398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 2e-63; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 7 - 457
Target Start/End: Original strand, 13470323 - 13470776
Alignment:
Q  7 tctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgttt 106  Q
    ||||||||||||||||||| |||| |||| ||| |||||| ||| |||||| ||||||||||||||| |||||  |||||||||  ||    |||||| |    
T  13470323 tctgaatgatcaacatgttctccaattgtcttcgtttcttagtggtttgatgtccataaaccttagttgttgtcttaagctcacaaaattagctttgtat 13470422  T
Q  107 acacttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattggga---gtaagagtggagggaattctgaatctttggtggattttggtg 203  Q
     ||||   ||  ||||||| |  |||||||||||||||||||||| | || ||||   ||| ||||| || ||||||||||   ||||| ||  ||||||    
T  13470423 gcactcactagaaactgtcctctacttagtgagatcaaaatggaaggaatagggaagagtatgagtgtagagaattctgaaaaattggtcgaggttggtg 13470522  T
Q  204 tgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgct 303  Q
    | ||| |||||||||||||||||||| ||||    |||  |||||||| ||||||| | ||||||||||||||||| | |||||||||||||||||||||    
T  13470523 tataccctcaattaaagtctctctatttgggaaaaaatcaatggttaagtgatgaaggcatcataatgtttgcttccaatttccccaatttgcagctgct 13470622  T
Q  304 tgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtg 403  Q
    |||||||| || || ||  |   ||||| ||||||||||  |||||||||||| |||||||||||||| ||||||||||||| |   |||| | ||||||    
T  13470623 tgatttgaattgttgcaatctcttatcaaaaggtatttgtcaagttttaaggatatgttgtaagattaggcatttgaacttagcctattgtaaaaaagtg 13470722  T
Q  404 aagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    ||||||| | | || |||||||| |||||||   ||||||||||||||||||||    
T  13470723 aagctacttggaatgaactttgttgttcccaatctggaggtgttgaacttgtca 13470776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 7 - 457
Target Start/End: Original strand, 51764034 - 51764484
Alignment:
Q  7 tctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgttt 106  Q
    ||||||||||  |||||||||  | |||| ||  |||||| || ||||| | |||||||||||||||||||||  |||||||||  ||    | ||| ||    
T  51764034 tctgaatgatatacatgttgtaaatttgtctttgtttcttagtaatttggtgtccataaaccttagtggttgtcctaagctcaccaaatcagccttgctt 51764133  T
Q  107 acacttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattgggagtaagagtggagggaattctgaatctttggtggattttggtgtgt 206  Q
    || |||| || | | |||| ||||||| |||||||||||||||||   |||||||   |  ||| || ||||||||| ||||||||||| |||||||| |    
T  51764134 actcttgctaggtattgtccttcacttggtgagatcaaaatggaaaacattgggacggattgtgtagagaattctgattctttggtggactttggtgtat 51764233  T
Q  207 acactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttga 306  Q
    || |||||||||||||||||||||||||    ||| ||||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  51764234 accctcaattaaagtctctctatctgggtgaaaatacatggttaagtgatgaaagcatcataatgtttgcttccattttccccaatttgcagctgcttga 51764333  T
Q  307 tttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaag 406  Q
    ||| | ||||| ||  |  |||||  ||||| | || ||||||||||||| ||||| |||||||| |||||||||| |||| |  ||||  | |||||||    
T  51764334 ttttaattcttgcaatcgcatatctaaaggtgtctgtgaagttttaaggagatgttctaagattaggcatttgaacctatccgaatgttcaagagtgaag 51764433  T
Q  407 ctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    |||| | | || ||||||| |||||| | | ||||||||||  ||||||||    
T  51764434 ctacttggaatgaactttgcagttccgaagctggaggtgttagacttgtca 51764484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 101 - 311
Target Start/End: Original strand, 514407 - 514623
Alignment:
Q  101 ttgtttacacttgttaagaactgtcattcacttagtgagatcaaaatgga------acgtattgggagtaagagtggagggaattctgaatctttggtgg 194  Q
    |||||| |||||||||||||||||| |||||||||||||||||||||| |      | |||||||||   |  ||| || ||| ||  | |||||| |||    
T  514407 ttgtttgcacttgttaagaactgtccttcacttagtgagatcaaaatgaattacacaagtattgggaaacaatgtgtagagaactccaattctttgttgg 514506  T
Q  195 attttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaattt 294  Q
    | |||| |||| || |||||||||| ||||||||| |||  | ||||||||| ||||  |||||||   | ||||||||||||||||||||||| |||||    
T  514507 actttgttgtgaaccctcaattaaaatctctctatttggctcacaattcatgcttaagagatgaaaaccttataatgtttgcttcaattttcccgaattt 514606  T
Q  295 gcagctgcttgatttga 311  Q
    ||||||  |||||||||    
T  514607 gcagctaattgatttga 514623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 212 - 381
Target Start/End: Original strand, 51113580 - 51113749
Alignment:
Q  212 caattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttga 311  Q
    ||||||||||||||| |  |||  | |||| |||||||||  ||||| || ||||||||| ||||||| |||||||||||| ||||||| |||||||| |    
T  51113580 caattaaagtctctccagttggatcacaatccatggttaagagatgagagcatcataatgattgcttccattttccccaatctgcagcttcttgatttaa 51113679  T
Q  312 cttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaa 381  Q
    ||  || |    ||||||| |||||||||||  ||||||||| || ||||||||| |||| |||||||||    
T  51113680 ctcattgctatgagatatccgaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaa 51113749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 687 - 729
Target Start/End: Complemental strand, 46926743 - 46926701
Alignment:
Q  687 tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt 729  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  46926743 tataatgtacaatgtaatgcaagcggttgaatgtcgtgttgtt 46926701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 471 - 510
Target Start/End: Original strand, 51113911 - 51113950
Alignment:
Q  471 atgtcacagagaagggagtgaaacatatggtagaaaaatg 510  Q
    |||||||||||||||||||||| ||| |||||||||||||    
T  51113911 atgtcacagagaagggagtgaagcatgtggtagaaaaatg 51113950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 663
Target Start/End: Original strand, 51764737 - 51764766
Alignment:
Q  634 atgtcaacttacaaatgtgcatttactcat 663  Q
    ||||||||||||||||||||||||||||||    
T  51764737 atgtcaacttacaaatgtgcatttactcat 51764766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 111; Significance: 1e-55; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 101 - 458
Target Start/End: Original strand, 19468187 - 19468544
Alignment:
Q  101 ttgtttacacttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattgggagtaagagtggagggaattctgaatctttggtggattttg 200  Q
    ||||||||||| |||| ||| |||| |||||||||||||||||||||||||  ||||||||||||||||| || ||||||||| ||||||  ||||||||    
T  19468187 ttgtttacactcgttaggaattgtccttcacttagtgagatcaaaatggaaaatattgggagtaagagtgtagagaattctgattctttgccggattttg 19468286  T
Q  201 gtgtgtacactcaattaaagtctctctatctgggccg-caattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagc 299  Q
    |||| | | |||||||||||| |||||| || ||| |  |||||||||||||  |||||||  ||||||||||||||||| ||||| |||||||||||||    
T  19468287 gtgtattccctcaattaaagtatctcta-cttggctgagaattcatggttaagcgatgaaaacatcataatgtttgcttccatttttcccaatttgcagc 19468385  T
Q  300 tgcttgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataa 399  Q
    ||||||||||||  || | ||  || ||||| ||||| |||||  ||||||||||||  |||| ||| |||| |||||| |||||| |    ||||  |     
T  19468386 tgcttgatttgaactcatgcaaccacatatcggaaggcatttgtcaagttttaaggaggtgttctaatattaggcatttaaacttagcccactgttcaag 19468485  T
Q  400 agtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtcag 458  Q
    |||||| |||| | |  | |||||||||||||||| | ||||||||||||| |||||||    
T  19468486 agtgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcag 19468544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 9586941 - 9586844
Alignment:
Q  210 ctcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgat 307  Q
    ||||||| ||||||||  || |||| ||||||  ||||||||  ||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  9586941 ctcaattgaagtctcttgatttgggtcgcaatcaatggttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9586844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 210 - 307
Target Start/End: Complemental strand, 9581373 - 9581276
Alignment:
Q  210 ctcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgat 307  Q
    ||||||||||||||||  || |||| | ||||  ||| ||||  ||| |||  |||||||||||||||||||||||||||||||||||||||||||||    
T  9581373 ctcaattaaagtctcttgatttgggtcacaatcaatgtttaagagataaaaacatcataatgtttgcttcaattttccccaatttgcagctgcttgat 9581276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 151
Target Start/End: Complemental strand, 33161018 - 33160874
Alignment:
Q  7 tctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgttt 106  Q
    |||||||||||||||||||| | |||| | ||  ||||||| || |||| | || |||||||||| ||| |||   | |||||| |||    | ||||||    
T  33161018 tctgaatgatcaacatgttgccgagttctctttgtttcttgctgctttggtgtctataaaccttaatggatgttggaggctcacagaatcagcattgttt 33160919  T
Q  107 acacttgttaagaactgtcattcacttagtgagatcaaaatggaa 151  Q
     |||||||||  ||||||| |||||||||||| ||||||||||||    
T  33160918 tcacttgttacaaactgtccttcacttagtgacatcaaaatggaa 33160874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 1e-46; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 11 - 457
Target Start/End: Complemental strand, 6416470 - 6416021
Alignment:
Q  11 aatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgtttacac 110  Q
    |||||||||||||||||||| |||| | | |||||| ||| |||||| ||||||||||||||| ||||   |||||||||  ||  | |||||| | |||    
T  6416470 aatgatcaacatgttgtccaattgtctccgtttcttagtggtttgatgtccataaaccttagttgttgccttaagctcacaaaatatgctttgtatgcac 6416371  T
Q  111 ttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattggga---gtaagagtggagggaattctgaatctttggtggattttggtgtgta 207  Q
    |   ||  ||||||| |  |||||| ||||||||||||||| | || ||||   ||| ||||| || ||||||||||   ||||| || |||||||| ||    
T  6416370 tcactagaaactgtcctctacttagcgagatcaaaatggaaggaatagggaagagtatgagtgtagagaattctgaaaaattggtcgagtttggtgtata 6416271  T
Q  208 cactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgat 307  Q
    | |||||||||||||||||||| ||||    |||  ||||||||  |||||| | |||||||||||| |||| |  ||||||||||||||||||||||||    
T  6416270 ccctcaattaaagtctctctatttgggaaaaaataaatggttaagcgatgaaggtatcataatgttttcttccaacttccccaatttgcagctgcttgat 6416171  T
Q  308 ttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagc 407  Q
    |||| |  ||  |  |   |||| |||||||||||  ||||||||| || |||||||||||||  ||||||||||||| |   |||| | ||||||||||    
T  6416170 ttgaatcgttgtaatctcttatctgaaggtatttgtcaagttttaaagatatgttgtaagattgggcatttgaacttagccttttgtaaaaaagtgaagc 6416071  T
Q  408 tacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    ||||| | ||  |||||||||||||||   ||||||||||||||||||||    
T  6416070 tacatggaatggactttgtagttcccaacctggaggtgttgaacttgtca 6416021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 7 - 457
Target Start/End: Original strand, 6588920 - 6589367
Alignment:
Q  7 tctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgttt 106  Q
    |||||||||||||||||||||| | |||| ||| ||||||||||||||| | ||| |||||||||||  |||   |||| |||| |||    ||||||||    
T  6588920 tctgaatgatcaacatgttgtcgaattgtcttcctttcttggtgatttggtgtccgtaaaccttagtaattgcagtaagatcacagaatcagctttgttt 6589019  T
Q  107 acacttgttaagaactgtcattcacttagtgagatcaaaatggaacgtattgggagtaagagtggagggaattctgaatctttggtggattttggtgtgt 206  Q
     |||||| || ||| |||| || |||| ||||||||| |||||||  |||| || |||   ||| ||  |||| |||||||  ||   || |||||||      
T  6589020 gcacttgctaggaagtgtcctttacttggtgagatcacaatggaaaatattaggggta---gtgtagcaaattatgaatctccggcatatattggtgttc 6589116  T
Q  207 acactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttga 306  Q
    |  |||||||||||||||||||| ||||    ||||||||||||| ||||| ||  ||||||||||||||||| ||||||||||||||  || |||||||    
T  6589117 atcctcaattaaagtctctctatttgggtaaaaattcatggttaagtgatgcaaatatcataatgtttgcttccattttccccaatttagaggtgcttga 6589216  T
Q  307 tttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaag 406  Q
    ||| | |||||  |   | |||||  ||||||||||  |||| || || | |||||||||||||| ||||||||||||| |    ||| | |||||||||    
T  6589217 tttcaattcttgtaataacatatctaaaggtatttgtcaagtattgagaagatgttgtaagattaggcatttgaacttagccttctgtaagaaagtgaag 6589316  T
Q  407 ctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    |||| | | || |||||||||||||||||| ||||||||||||||||||||    
T  6589317 ctacttggaatgaactttgtagttcccatgctggaggtgttgaacttgtca 6589367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 199 - 457
Target Start/End: Complemental strand, 6426824 - 6426566
Alignment:
Q  199 tggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcag 298  Q
    |||||| ||| ||||||| |||||||||||||||||  | ||||||||||||| ||||||||  |||||||||| |||||| |||||||||||||| |||    
T  6426824 tggtgtataccctcaattgaagtctctctatctgggtagaaattcatggttaagtgatgaaatcatcataatgtatgcttccattttccccaatttacag 6426725  T
Q  299 ctgcttgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttata 398  Q
    || ||||||||||    || |    | ||||| ||||||||||| |||||||||||||||||||||||| |||| |||||||||||| |    ||||  |    
T  6426724 ctacttgatttgaaggtttgccgtgaaatatctgaaggtatttgtgaagttttaaggaaatgttgtaagcttaaacatttgaacttagctttctgttcaa 6426625  T
Q  399 aagtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    | ||||| |||||| | || ||||||| |||||||  | ||||||||||||| ||||||    
T  6426624 acgtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaatttgtca 6426566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 7e-36
Query Start/End: Original strand, 122 - 457
Target Start/End: Complemental strand, 6410402 - 6410061
Alignment:
Q  122 tgtcattcacttagtgagatcaaaatg----gaac--gtattgggagtaagagtggagggaattctgaatctttggtggattttggtgtgtacactcaat 215  Q
    |||| |||||||| |||||||||||||    ||||  |||||||||   |||||| |||| ||||| | |||||||| || |||||||| ||| ||||||    
T  6410402 tgtccttcacttaatgagatcaaaatgaaaagaacaagtattgggaaagagagtgtagggcattctaattctttggttgagtttggtgtataccctcaat 6410303  T
Q  216 taaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttgacttc 315  Q
    |||||||||||||| |||    |||| ||| ||||| |||||||| ||||||  |||||||||| ||||| |||||||| || || |||||||||||       
T  6410302 taaagtctctctatttggattacaatacatcgttaagtgatgaaataatcattttgtttgcttccatttttcccaatttacaactacttgatttgacggg 6410203  T
Q  316 ttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagt 415  Q
    || |   || ||||| |||||||||||  ||||||||  ||||||||||||| ||||||||||| ||||| |   |||  | ||||||||||||||| |     
T  6410202 ttgccagcaaatatctgaaggtatttgtcaagttttacagaaatgttgtaagcttaagcatttggacttagcctattgcaaaaaagtgaagctacatgga 6410103  T
Q  416 atcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    || ||||||| |||||||| | || |||||||||||| ||||    
T  6410102 atgaactttgaagttcccaagctgaaggtgttgaactagtca 6410061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 199 - 457
Target Start/End: Complemental strand, 6395177 - 6394919
Alignment:
Q  199 tggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcag 298  Q
    |||||| ||| |||| ||||| ||||||||| ||||    ||||  |||||||  ||||||| ||||||||||||| |||| |||||||||||||| |||    
T  6395177 tggtgtataccctcagttaaactctctctatttgggtacaaattactggttaatagatgaaataatcataatgtttacttccattttccccaatttacag 6395078  T
Q  299 ctgcttgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttata 398  Q
    || |||||||||||   || |  ||| ||||| |||||||||||  ||||||||| ||||||||||||| |||| |||||||||||| |    ||||  |    
T  6395077 ctacttgatttgacacgttgctcacaaatatctgaaggtatttgtcaagttttaaagaaatgttgtaagcttaaacatttgaacttagctttctgttcaa 6394978  T
Q  399 aagtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    ||||||| |||||| | || ||||||| |||||||  | ||||||||||||||||||||    
T  6394977 aagtgaaactacatggaatgaactttgcagttcccgagctggaggtgttgaacttgtca 6394919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 187 - 457
Target Start/End: Complemental strand, 6432486 - 6432216
Alignment:
Q  187 tttggtggattttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttc 286  Q
    |||| ||||| ||| ||| ||| |||| ||||||||||||||| |||| | ||||||||||||||   ||||||| ||||||||||||||||| ||||||    
T  6432486 tttgttggatattgatgtataccctcagttaaagtctctctatttgggtcacaattcatggttaaggaatgaaaggatcataatgtttgcttccattttc 6432387  T
Q  287 cccaatttgcagctgcttgatttgactt-cttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaactta 385  Q
    ||||||||||| |  |||||||||  ||  |  ||| |  |||   |||||||||||  |||||||||||| |||||||||  |||| ||||||||||||    
T  6432386 cccaatttgcaacatcttgatttgcgttggtgtcat-cgtataaatgaaggtatttgtcaagttttaaggagatgttgtaaacttaaacatttgaactta 6432288  T
Q  386 tcaggttgttataaagtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
     |   ||||   ||||||||||||||| | || ||||||| |||||||| | || |||||||||||||||||    
T  6432287 gcctattgtataaaagtgaagctacatggaatgaactttgaagttcccaagctgaaggtgttgaacttgtca 6432216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 254 - 457
Target Start/End: Original strand, 6594447 - 6594650
Alignment:
Q  254 gatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaa 353  Q
    |||||||  |||||| |||||||||| |||||||||| |||| |||||||||||||||  | ||||   || ||||| |||||||||||  |||||||||    
T  6594447 gatgaaaacatcatattgtttgcttctattttccccactttggagctgcttgatttgaggttttccgatcaaatatctgaaggtatttgtcaagttttaa 6594546  T
Q  354 ggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaactt 453  Q
    ||| ||||| ||||||||  |||||| ||||||| || ||||  | ||||||||||||| | || |||||| |||||||||   ||||||||||| ||||    
T  6594547 ggagatgttataagattacacatttgtacttatccgggtgttcaagagtgaagctacatggaataaactttttagttcccaaactggaggtgttgtactt 6594646  T
Q  454 gtca 457  Q
    ||||    
T  6594647 gtca 6594650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 101 - 453
Target Start/End: Complemental strand, 14821107 - 14820752
Alignment:
Q  101 ttgtttacacttgttaagaactgtcattcacttagtgagatcaaaatggaacg------tattgggagtaagagtggagggaattctgaatctttggtgg 194  Q
    |||||| |||| |||| ||||||| ||||||||| |||  ||||||||||| |      ||||||||   ||| || ||||||||| || ||||| || |    
T  14821107 ttgttttcactcgttaggaactgttattcacttattgaagtcaaaatggaatgcacggctattgggaaagagaatgtagggaattcagattctttagttg 14821008  T
Q  195 attttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaattt 294  Q
    | | |||||| ||| ||||||| |||||||||||| |||| | ||||||||||||||||||||||| ||||||  ||| |||||| |||||||| |||||    
T  14821007 agtatggtgtataccctcaattgaagtctctctatttgggtcacaattcatggttaaatgatgaaataatcattttgtatgcttccattttcccaaattt 14820908  T
Q  295 gcagctgcttgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgt 394  Q
      |||| ||||||||      |||    |  ||||| |||||||||||  ||| ||||||||||||||||||| |||| ||||||||||||  |  ||||    
T  14820907 aaagctacttgatttacaagattc---tcctatatctgaaggtatttgtcaaggtttaaggaaatgttgtaagcttaaacatttgaacttagaattttgt 14820811  T
Q  395 tataaagtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaactt 453  Q
    |    |||||| |||||| | || ||||||| |||||||| ||| ||||||||||||||    
T  14820810 tcaggagtgaaactacatggaattaactttgcagttcccaagttagaggtgttgaactt 14820752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 210 - 385
Target Start/End: Original strand, 10579533 - 10579708
Alignment:
Q  210 ctcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgattt 309  Q
    |||||||||| ||||||||| ||||  | ||||||| ||||  ||||||||  || |||||||| |||||  ||||||||||||||||||||||||||||    
T  10579533 ctcaattaaaatctctctatttgggtagaaattcattgttacgtgatgaaatgattataatgttagcttcctttttccccaatttgcagctgcttgattt 10579632  T
Q  310 gacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaactta 385  Q
    || | ||| |  | | ||||| ||||||||||   |||||| | | | |||| |||||||||||||||||||||||    
T  10579633 gaatacttgcgaatacatatctgaaggtatttttcaagtttcaggaagatgtggtaagattaagcatttgaactta 10579708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 210 - 458
Target Start/End: Complemental strand, 7119459 - 7119211
Alignment:
Q  210 ctcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgattt 309  Q
    |||| ||||||||||||||| | ||  | |||| | |||||| |||||||| |||  |||| || |||||  ||||||||||||| || || ||||||||    
T  7119459 ctcagttaaagtctctctatttaggtagaaatttacggttaactgatgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttgattt 7119360  T
Q  310 gacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagcta 409  Q
    || | ||| ||   | ||||| |||||||||||  |||||||||||| ||||| ||||||||| |||||||||||| |    ||||  | ||||||||||    
T  7119359 gaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagcta 7119260  T
Q  410 catagtatcaactttgtagttcccatgttggaggtgttgaacttgtcag 458  Q
    | | | || |||||||| |||| |  | |||||||||||||||||||||    
T  7119259 cttggaatgaactttgttgttcaccagctggaggtgttgaacttgtcag 7119211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 210 - 458
Target Start/End: Complemental strand, 7131937 - 7131689
Alignment:
Q  210 ctcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgattt 309  Q
    |||| ||||||||||||||| | ||  | |||| | |||||| |||||||| |||  |||| || |||||  ||||||||||||| || || ||||||||    
T  7131937 ctcagttaaagtctctctatttaggtagaaatttacggttaactgatgaaaaaattgtaatattagcttcctttttccccaatttacaacttcttgattt 7131838  T
Q  310 gacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagcta 409  Q
    || | ||| ||   | ||||| |||||||||||  |||||||||||| ||||| ||||||||| |||||||||||| |    ||||  | ||||||||||    
T  7131837 gaatacttgcaataacatatctgaaggtatttgtcaagttttaaggagatgttctaagattaaacatttgaacttagcccactgttcaagagtgaagcta 7131738  T
Q  410 catagtatcaactttgtagttcccatgttggaggtgttgaacttgtcag 458  Q
    | | | || |||||||| |||| |  | |||||||||||||||||||||    
T  7131737 cttggaatgaactttgttgttcgccagctggaggtgttgaacttgtcag 7131689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 101 - 311
Target Start/End: Original strand, 6602887 - 6603103
Alignment:
Q  101 ttgtttacacttgttaagaactgtcattcacttagtgagatcaaaatggaacg------tattgggagtaagagtggagggaattctgaatctttggtgg 194  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||||||||        ||||||||   ||| || || ||||  ||| ||| || |||    
T  6602887 ttgttttcacttgttaaaaactgtccttcacttagtgagatcaaaatggaagacacagatattgggaaagagaatgtagagaataatgattctatgatgg 6602986  T
Q  195 attttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaattt 294  Q
    || ||||| | ||| |||||||||||||||||||| | ||   ||||| |||||||| || | ||| ||||||||||||||||||   | |||||| |||    
T  6602987 atattggtatataccctcaattaaagtctctctatttaggtgacaatttatggttaagtgttcaaaaaatcataatgtttgcttcttctatccccagttt 6603086  T
Q  295 gcagctgcttgatttga 311  Q
    |||||| ||||||||||    
T  6603087 gcagctacttgatttga 6603103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 172 - 457
Target Start/End: Complemental strand, 6423557 - 6423272
Alignment:
Q  172 agggaattctgaatctttggtggattttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatg 271  Q
    |||| |||| || ||||| || || ||||| || ||| |||||||||||||||||||| ||||   || ||| ||||||| ||||||||  |||||||||    
T  6423557 agggcattcagattctttagttgagtttggggtataccctcaattaaagtctctctatttgggttacacttcgtggttaagtgatgaaatcatcataatg 6423458  T
Q  272 tttgcttcaattttccccaatttgcagctgcttgatttgacttctt-ccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagatt 370  Q
    |||||||| |||||||| |||||  | || ||||||||||    || |||| || ||||  || ||||||||  | |||||| |||||||| || || ||    
T  6423457 tttgcttccattttccctaatttaaaactacttgatttgaagggttgccat-caaatatttgatggtatttgtcatgttttacggaaatgtcgtgagctt 6423359  T
Q  371 aagcatttgaacttatcaggttgttataaagtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    || |||||||||||| |   |||| |  |||||||||||| |   || ||||||  |||||||| | ||||||||||||||||||||    
T  6423358 aaacatttgaacttagcctattgtgaacaagtgaagctacgtgcaatgaacttttaagttcccaagctggaggtgttgaacttgtca 6423272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 457
Target Start/End: Original strand, 7994032 - 7994226
Alignment:
Q  263 atcataatgtttgcttcaattttccccaatttgcagctgcttgatttgacttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgtt 362  Q
    |||||| |||||||| | |||||||| ||||||||| |||| ||||||| ||||| ||     ||||| |||||||||||  | ||||||||||||||||    
T  7994032 atcatattgtttgctaccattttcccaaatttgcagatgctcgatttgaattcttgcaatggtatatctgaaggtatttgttacgttttaaggaaatgtt 7994131  T
Q  363 gtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagtatcaactttgtagttcccatgttggaggtgttgaacttgtca 457  Q
    ||||||| | |||||||||| || | | ||||   | |||||||||||   | || |||||||||||||| | | | |||||||||||| |||||    
T  7994132 gtaagatcaggcatttgaacatagccgattgtacaagagtgaagctactaggaatgaactttgtagttccgaagctagaggtgttgaacatgtca 7994226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 474 - 604
Target Start/End: Complemental strand, 19632405 - 19632275
Alignment:
Q  474 tcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattctt 573  Q
    ||||||||||||||||||||||  |||||||||| || | || |||||  || ||| ||||||||||| | |||| ||| ||| |||  |||||| |||     
T  19632405 tcacagagaagggagtgaaacacgtggtagaaaactgcaaacaactgaaggagatttatttgggggatattcattcaagtgacaaaactaggaaactctg 19632306  T
Q  574 ctcgcgtcgtggatgccttctttgctagtat 604  Q
    || ||||| ||||||||||||||||||||||    
T  19632305 cttgcgtcatggatgccttctttgctagtat 19632275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 474 - 596
Target Start/End: Original strand, 6594739 - 6594861
Alignment:
Q  474 tcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattctt 573  Q
    |||||||| ||||||  |||||| |||||||||| || |||| | ||||||||||  ||||| ||| ||  |||||||| |||||||  ||| || ||||    
T  6594739 tcacagaggagggagccaaacatgtggtagaaaactgcacacaattgagagaaatgtatttgaggggttgtcatttaagtgacgaaattagggaactctt 6594838  T
Q  574 ctcgcgtcgtggatgccttcttt 596  Q
    ||||||||| |||||||||||||    
T  6594839 ctcgcgtcggggatgccttcttt 6594861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 198 - 311
Target Start/End: Complemental strand, 19632750 - 19632637
Alignment:
Q  198 ttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgca 297  Q
    ||||||| ||| |||||||||||||||||||| |||| || |||| | |||||| ||||||||  || | |||||| |||||  |||| ||||||||| |    
T  19632750 ttggtgtataccctcaattaaagtctctctatttgggtcgaaatttacggttaagtgatgaaaagattacaatgttcgcttcgttttttcccaatttgta 19632651  T
Q  298 gctgcttgatttga 311  Q
    || |||||||||||    
T  19632650 gcggcttgatttga 19632637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 326 - 458
Target Start/End: Complemental strand, 6403046 - 6402914
Alignment:
Q  326 atatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagtatcaactttg 425  Q
    ||||| |||||||||||  |||||||||||| ||||||||| |||| ||||||||||||| | || ||||  | ||||||||||| | | || |||||||    
T  6403046 atatctgaaggtatttgtcaagttttaaggagatgttgtaacattaggcatttgaacttaactgggtgttcaagagtgaagctacttggaataaactttg 6402947  T
Q  426 tagttcccatgttggaggtgttgaacttgtcag 458  Q
     |||||||    | || ||||||||||||||||    
T  6402946 cagttccccaactagaagtgttgaacttgtcag 6402914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 724 - 808
Target Start/End: Complemental strand, 14800940 - 14800856
Alignment:
Q  724 gttgttaaatgtgtgtgtacatagttttagttttatttttaccatcgttgtactctcaaataccacctccaccatttttgtactc 808  Q
    ||||||||||||||||||||||||  ||||||| ||| |||||  | |||||| ||||||  ||||||||||||| |||||||||    
T  14800940 gttgttaaatgtgtgtgtacatagcattagtttcattgttaccgccattgtaccctcaaactccacctccaccatctttgtactc 14800856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 469 - 604
Target Start/End: Original strand, 6589451 - 6589586
Alignment:
Q  469 ttatgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaa 568  Q
    ||||||||| ||| |||||||||||||| |||||||||| || ||||||||   ||| ||| || |||||||| | |||||||| ||| |||  ||| ||    
T  6589451 ttatgtcacggaggagggagtgaaacatgtggtagaaaactgcacacgacttcaagagatttatctgggggatattcatttaagtgacaaaactagggaa 6589550  T
Q  569 ttcttctcgcgtcgtggatgccttctttgctagtat 604  Q
     ||||||| | || |||||||| ||||| |||||||    
T  6589551 atcttctcccatcatggatgccatctttactagtat 6589586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 471 - 604
Target Start/End: Complemental strand, 6394833 - 6394700
Alignment:
Q  471 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaatt 570  Q
    |||||||||| ||||| ||| ||||| |||||||||| || |||| | ||||||| ||| ||||||||||| |  || |||| |||||||| ||| || |    
T  6394833 atgtcacagaaaagggtgtggaacatgtggtagaaaactgcacacaattgagagagattaatttgggggatattgatgtaagtgacgaaaatagggaact 6394734  T
Q  571 cttctcgcgtcgtggatgccttctttgctagtat 604  Q
      | | |||||||||||||| | |||||||||||    
T  6394733 tctattgcgtcgtggatgccgtatttgctagtat 6394700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 483 - 592
Target Start/End: Original strand, 7994324 - 7994433
Alignment:
Q  483 agggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcg 582  Q
    |||||||||||||| |||||||||| || || | ||||| ||| ||| |||| |||||||| ||| |||| ||| |||| ||| || ||||||||||||     
T  7994324 agggagtgaaacatgtggtagaaaactgcacgcaactgaaagagatttatttaggggattttcatataagtgacaaaaatagggaactcttctcgcgtca 7994423  T
Q  583 tggatgcctt 592  Q
     |||||||||    
T  7994424 cggatgcctt 7994433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 211 - 384
Target Start/End: Original strand, 8913783 - 8913955
Alignment:
Q  211 tcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttg 310  Q
    ||||||||||||||| ||| ||||   |||||  |||||||  |||||||  ||||||||||||||||| |||||  ||||||||||  ||||||||||     
T  8913783 tcaattaaagtctctttatttgggtgacaatttgtggttaacggatgaaatcatcataatgtttgcttccattttttccaatttgcatatgcttgattt- 8913881  T
Q  311 acttcttccatacagatatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaactt 384  Q
    | || ||      | |||||  ||||||||||  |||||||||| | ||||||||||||||| |||||||||||    
T  8913882 aattattgagattatatatctaaaggtatttgtcaagttttaagaagatgttgtaagattaaacatttgaactt 8913955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 471 - 604
Target Start/End: Complemental strand, 14820662 - 14820529
Alignment:
Q  471 atgtcacagagaagggagtgaaacatatggtagaaaaatgtacacgactgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaatt 570  Q
    |||||||||||||||| ||||||||| ||||| |||| || ||||  |||||||| ||| |||||| ||  || ||||||||   | |||  |||||| |    
T  14820662 atgtcacagagaagggtgtgaaacatgtggtaaaaaactgcacacagctgagagagattaatttggcggggtttcatttaagtctcaaaattaggaaact 14820563  T
Q  571 cttctcgcgtcgtggatgccttctttgctagtat 604  Q
    | | |||||||||||||| | |||||||||||||    
T  14820562 catatcgcgtcgtggatgtcatctttgctagtat 14820529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 326 - 458
Target Start/End: Original strand, 6585150 - 6585282
Alignment:
Q  326 atatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagtatcaactttg 425  Q
    ||||| |||||||||||  | |||||||||| ||||| ||| |||| ||||||||||||  | || ||||  | ||||||||||| | | || ||||||     
T  6585150 atatctgaaggtatttgtcatgttttaaggagatgttttaatattaggcatttgaactttactgggtgttcaagagtgaagctacttggaataaactttt 6585249  T
Q  426 tagttcccatgttggaggtgttgaacttgtcag 458  Q
    ||||| ||  ||||||||| |||||||||||||    
T  6585250 tagttacccagttggaggtattgaacttgtcag 6585282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 271 - 311
Target Start/End: Complemental strand, 9411596 - 9411556
Alignment:
Q  271 gtttgcttcaattttccccaatttgcagctgcttgatttga 311  Q
    ||||||||| |||||||||||||||||||||||||||||||    
T  9411596 gtttgcttccattttccccaatttgcagctgcttgatttga 9411556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 8913659 - 8913723
Alignment:
Q  9 tgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagt 73  Q
    |||||||||||||||||||| |||||| ||  ||||||||| ||||| | || ||||||||||||    
T  8913659 tgaatgatcaacatgttgtcaagttgtctttgtttcttggtaatttggtgtctataaaccttagt 8913723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 469 - 507
Target Start/End: Original strand, 6603330 - 6603368
Alignment:
Q  469 ttatgtcacagagaagggagtgaaacatatggtagaaaa 507  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  6603330 ttatgtcacagagaaaggagtgaaacatgtggtagaaaa 6603368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 229
Target Start/End: Complemental strand, 6403229 - 6403164
Alignment:
Q  164 aagagtggagggaattctgaatctttggtggattttggtgtgtacactcaattaaagtctctctat 229  Q
    ||||||| || ||||||||| ||||||  |||| ||||||| ||| |||| |||||||||||||||    
T  6403229 aagagtgtagagaattctgattctttgacggatattggtgtataccctcagttaaagtctctctat 6403164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 519 - 604
Target Start/End: Complemental strand, 6423138 - 6423053
Alignment:
Q  519 tgagagaaattcatttgggggatttgcatttaagagacgaaaagaggaaattcttctcgcgtcgtggatgccttctttgctagtat 604  Q
    ||||||| ||| ||||||| ||||| ||| |||| ||| |||| | |||| || ||| |  |||||||||||||||||||||||||    
T  6423138 tgagagagatttatttgggagattttcatgtaagtgacaaaaataagaaactcatcttggatcgtggatgccttctttgctagtat 6423053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 6426949 - 6426860
Alignment:
Q  62 ataaaccttagtggttgtgataagctcactgaacgttctttgtttacacttgttaagaactgtcattcacttagtgagatcaaaatggaa 151  Q
    |||||||||||||||||| || | ||||| |||    | |||||| |||||||||  ||||||| |||| |||||||||| |||||||||    
T  6426949 ataaaccttagtggttgtcatcatctcacagaaacaacattgttttcacttgttagaaactgtccttcaattagtgagattaaaatggaa 6426860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 1e-28; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 7 - 152
Target Start/End: Complemental strand, 28532219 - 28532074
Alignment:
Q  7 tctgaatgatcaacatgttgtccagttgtattcatttcttggtgatttgatttccataaaccttagtggttgtgataagctcactgaacgttctttgttt 106  Q
    ||||||||||||||||||| ||||||||| ||| ||||||||||||||||| ||||| |||||||||  |||||||||||| || |||   |||||||||    
T  28532219 tctgaatgatcaacatgttatccagttgtcttcgtttcttggtgatttgatgtccatcaaccttagtaattgtgataagctaacagaatcatctttgttt 28532120  T
Q  107 acacttgttaagaactgtcattcacttagtgagatcaaaatggaac 152  Q
     |||| | || |||||||| || |||| ||||||||| ||||||||    
T  28532119 gcactcgctaggaactgtcctttacttggtgagatcacaatggaac 28532074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 685 - 805
Target Start/End: Complemental strand, 28525035 - 28524911
Alignment:
Q  685 tatataatgtacaatgtaatgcaagcggttgaatgtcgtgttgttaaatgtgtgtgt----acatagttttagttttatttttaccatcgttgtactctc 780  Q
    |||||||||| ||||| ||||||||| ||||| ||  || ||||||||||||||| |    ||||||||||| | ||||||||||||||||||||| |||    
T  28525035 tatataatgtgcaatgcaatgcaagcagttgagtgaagttttgttaaatgtgtgtatgtggacatagttttactattatttttaccatcgttgtaccctc 28524936  T
Q  781 aaataccacctccaccatttttgta 805  Q
    |||  ||||||||||||| ||||||    
T  28524935 aaacgccacctccaccatctttgta 28524911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 114 - 311
Target Start/End: Complemental strand, 32267879 - 32267676
Alignment:
Q  114 ttaagaactgtcattcacttagtgagatcaaaatggaac------gtattgggagtaagagtggagggaattctgaatctttggtggattttggtgtgta 207  Q
    |||||||||| | ||||||||||||||||||||||||||      |||||||||  ||||||  || || |||| |||||||| ||||||||| ||  |     
T  32267879 ttaagaactgcccttcacttagtgagatcaaaatggaacacacatgtattgggaaaaagagtctagagagttctaaatctttgatggattttgttgcttg 32267780  T
Q  208 cactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgat 307  Q
    | |||||||||||| |||   | |||  | |||| ||||| ||  |||||||   ||||  ||| ||||||| || ||| ||||||||||||||||||||    
T  32267779 ccctcaattaaagtatcttcgtttggctcacaatccatggctatttgatgaatatatcaccatgcttgcttccatcttctccaatttgcagctgcttgat 32267680  T
Q  308 ttga 311  Q
    ||||    
T  32267679 ttga 32267676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 41889401 - 41889449
Alignment:
Q  263 atcataatgtttgcttcaattttccccaatttgcagctgcttgatttga 311  Q
    ||||||||||||||||| |||||||| ||||||||||| ||||||||||    
T  41889401 atcataatgtttgcttccattttccctaatttgcagctacttgatttga 41889449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 41901385 - 41901433
Alignment:
Q  263 atcataatgtttgcttcaattttccccaatttgcagctgcttgatttga 311  Q
    |||| |||||| ||||| |||||||||||||||||||||||||||||||    
T  41901385 atcacaatgttcgcttccattttccccaatttgcagctgcttgatttga 41901433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 20477866 - 20477966
Alignment:
Q  197 tttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgc 296  Q
    |||||||| ||  ||| ||| |||||||||||  |||| |  ||| ||||||||| |||||||| ||| ||||| |||||||| || |||||||||||||    
T  20477866 tttggtgtatatcctcgattgaagtctctctacttgggtcataatccatggttaagtgatgaaataataataatatttgcttctatgttccccaatttgc 20477965  T
Q  297 a 297  Q
    |    
T  20477966 a 20477966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 210 - 310
Target Start/End: Complemental strand, 28525313 - 28525213
Alignment:
Q  210 ctcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgattt 309  Q
    ||||||||||||||||| || || |   ||||||||||||||  || ||||  ||||||| ||||||||| ||||||| ||||||| || ||||| ||||    
T  28525313 ctcaattaaagtctctcaatttgtgtgacaattcatggttaagggacgaaaatatcataaggtttgcttccattttccacaatttggaggtgcttaattt 28525214  T
Q  310 g 310  Q
    |    
T  28525213 g 28525213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 345 - 453
Target Start/End: Original strand, 41889486 - 41889594
Alignment:
Q  345 aagttttaaggaaatgttgtaagattaagcatttgaacttatcaggttgttataaagtgaagctacatagtatcaactttgtagttcccatgttggaggt 444  Q
    |||||||||||| ||||||||| ||||   ||||||||||||| || ||||  | ||||||||||| |   || ||||||  ||||||||  ||||||||    
T  41889486 aagttttaaggatatgttgtaacattagatatttgaacttatccggatgttcaatagtgaagctacttgaaatgaactttaaagttcccaaattggaggt 41889585  T
Q  445 gttgaactt 453  Q
    |||||||||    
T  41889586 gttgaactt 41889594  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 263 - 381
Target Start/End: Original strand, 1037511 - 1037632
Alignment:
Q  263 atcataatgtttgcttcaattttccccaatttgcagctgcttgatttga-cttcttccatacagatatc---agaaggtatttgcgaagttttaaggaaa 358  Q
    |||||| |||||||||| |||||||||||||||||  | |||||||||| || || ||||| | |||||   |||||||||||| ||||||||||||| |    
T  1037511 atcatattgtttgcttccattttccccaatttgcaatttcttgatttgagctcctgccata-acatatctgaagaaggtatttgtgaagttttaaggaga 1037609  T
Q  359 tgttgtaagattaagcatttgaa 381  Q
    ||||||||| |||  ||||||||    
T  1037610 tgttgtaaggttagacatttgaa 1037632  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 311
Target Start/End: Original strand, 32785535 - 32785670
Alignment:
Q  176 aattctgaatctttggtggattttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgtttg 275  Q
    |||||| | |||||| ||||||||| |||   | |||||||||||| |||| || |||  |||||||  |||||||  |||||||| ||||  ||||||     
T  32785535 aattctaattctttgatggattttgttgtaatccctcaattaaagtttctccatttggctcgcaattattggttaagagatgaaagcatcaggatgtttt 32785634  T
Q  276 cttcaattttccccaatttgcagctgcttgatttga 311  Q
    |||| |||||  |||||||||| || ||||||||||    
T  32785635 cttctattttttccaatttgcaactacttgatttga 32785670  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 326 - 384
Target Start/End: Original strand, 43277373 - 43277431
Alignment:
Q  326 atatcagaaggtatttgcgaagttttaaggaaatgttgtaagattaagcatttgaactt 384  Q
    ||||| ||| |||||  |||||||||||||| ||||||||| |||| ||||||||||||    
T  43277373 atatctgaatgtattgtcgaagttttaaggagatgttgtaaaattacgcatttgaactt 43277431  T

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Target: chr8 (Bit Score: 39; Significance: 0.000000000001; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 309
Target Start/End: Original strand, 17627818 - 17627952
Alignment:
Q  175 gaattctgaatctttggtggattttggtgtgtacactcaattaaagtctctctatctgggccgcaattcatggttaaatgatgaaagaatcataatgttt 274  Q
    ||||||| | |||||||||||||| | |||   | |||||||||| ||||||||| |||    |||||||| | ||   |||||||  |||| |||||||    
T  17627818 gaattctaattctttggtggatttcgttgtaagccctcaattaaaatctctctatttggctttcaattcattgctatgcgatgaaaacatcaaaatgttt 17627917  T
Q  275 gcttcaattttccccaatttgcagctgcttgattt 309  Q
    ||||| ||||||||||||||||| |||||||||||    
T  17627918 gcttccattttccccaatttgcaactgcttgattt 17627952  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 237 - 311
Target Start/End: Original strand, 18315094 - 18315168
Alignment:
Q  237 gcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttga 311  Q
    |||||||||||||||  || ||||| |||| ||| ||| |||| |||||||||||||||||| ||||||||||||    
T  18315094 gcaattcatggttaagagaggaaagcatcaaaatattttcttccattttccccaatttgcagttgcttgatttga 18315168  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 32151576 - 32151502
Alignment:
Q  237 gcaattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgatttga 311  Q
    |||||||||||||||   |||| |  |||| |||||||||||| |||||||| |||||||| |||||||||||||    
T  32151576 gcaattcatggttaacatatgataacatcaaaatgtttgcttccattttccctaatttgcaactgcttgatttga 32151502  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 238 - 309
Target Start/End: Original strand, 17636219 - 17636290
Alignment:
Q  238 caattcatggttaaatgatgaaagaatcataatgtttgcttcaattttccccaatttgcagctgcttgattt 309  Q
    ||||||||||||||  ||||||||  |||||| | | | | | |||||||||||||||||||||||||||||    
T  17636219 caattcatggttaagagatgaaagcctcataaagctcgataccattttccccaatttgcagctgcttgattt 17636290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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