View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15000_high_10 (Length: 328)

Name: NF15000_high_10
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15000_high_10
NF15000_high_10
[»] chr3 (11 HSPs)
chr3 (8-328)||(26690032-26690352)
chr3 (112-328)||(26731447-26731663)
chr3 (10-328)||(26694192-26694513)
chr3 (34-328)||(26675729-26676026)
chr3 (168-319)||(26744355-26744506)
chr3 (168-319)||(26751280-26751431)
chr3 (198-328)||(26737329-26737459)
chr3 (198-328)||(26714093-26714223)
chr3 (25-118)||(26744562-26744655)
chr3 (168-328)||(26698941-26699101)
chr3 (168-303)||(26734129-26734264)


Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 26690032 - 26690352
Alignment:
Q  8 cgaagaatatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaag 107  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  26690032 cgaagaaaatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttgtgcttctttatgatatggtggttcttatttaag 26690131  T
Q  108 aataagaagcactttgttagagataatcaaggctacattcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgtt 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26690132 aataagaagcactttgttagagataatcaaggctacgttcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgtt 26690231  T
Q  208 ttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26690232 ttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaa 26690331  T
Q  308 aggagagagtgaatttcttgc 328  Q
    |||||||||||||||||||||    
T  26690332 aggagagagtgaatttcttgc 26690352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 112 - 328
Target Start/End: Original strand, 26731447 - 26731663
Alignment:
Q  112 agaagcactttgttagagataatcaaggctacattcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttag 211  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  26731447 agaagcactttcttagagataatcaaggctacgttcttgcaggagcaagatttcgaaaattcacttattcggaactaaaacttgcaacaaaatgttttag 26731546  T
Q  212 tcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaaagga 311  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26731547 tcaagagattggaagtggtgctggaggaactgtgtataagggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaaagga 26731646  T
Q  312 gagagtgaatttcttgc 328  Q
    |||||||||||||||||    
T  26731647 gagagtgaatttcttgc 26731663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 26694192 - 26694513
Alignment:
Q  10 aagaatatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaa 109  Q
    ||||| ||||| || ||||| | || ||||||||| | |||||||||||||||||||||||  | || || |||||||||||||  ||||||||||||||    
T  26694192 aagaaaatggatcagtgaagattatcctttggtttgcgtctggcttaggggtaattgaggcgctatgtttttttatgatatggttcttcttatttaagaa 26694291  T
Q  110 taagaagcactttgttagagataatcaaggctacattcttgcaggagcaa---gatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgt 206  Q
    ||   |||||||||||| |||||||||||||||| ||||||||||||| |   |||||| ||||||||||||||||||||||||||  ||||||||||||    
T  26694292 tagcgagcactttgttatagataatcaaggctacgttcttgcaggagctacaggatttcaaaaattcacttactcggaactaaaacaagcaacaaaatgt 26694391  T
Q  207 tttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaaca 306  Q
    |||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  26694392 tttagtcaagagattggaaagggtgctggaggaactgtgtataagggtttattatctgataatagagttgtggctataaagagattgcatgaagcaaaca 26694491  T
Q  307 aaggagagagtgaatttcttgc 328  Q
    ||| ||||||||||||||||||    
T  26694492 aagaagagagtgaatttcttgc 26694513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 26676026 - 26675729
Alignment:
Q  34 tgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagcactttgttagagataa 133  Q
    ||||||||||| |  || |||| || ||||||||||  || |||||||||||     |||| |||||||||||||||| ||||||||  | || | ||||    
T  26676026 tgctttggtttgcgacttgcttgggagtaattgaggtattgtgcttctttattgcggggtgcttcttatttaagaataggaagcactccgctacaaataa 26675927  T
Q  134 tcaaggctacattcttgcaggagcaa---gatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggt 230  Q
     ||||||||||||||||||  |||     |||||||  |||||| |||||| ||| | ||||  ||||||||| |||| ||||||||||||||||| |||    
T  26675926 acaaggctacattcttgcaatagcccctggatttcgggaattcagttactctgaattgaaacaagcaacaaaaggtttcagtcaagagattggaaagggt 26675827  T
Q  231 gctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaaaggagagagtgaatttcttgc 328  Q
    |||||||||||||| ||||  |||||||||||||||||||| ||||||||||||||  |||| || ||||||||| |||| || || ||||| |||||    
T  26675826 gctggaggaactgtatataaaggtttattatctgataatagggttgtggctataaaacgactacacgaagcaaaccaaggtgaaagagaattccttgc 26675729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 26744506 - 26744355
Alignment:
Q  168 aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgata 267  Q
    |||||||| ||||| |||||||||| |||||||||   ||| ||||||||||||||||| |||||| | ||||||||||||| |||| | ||||||||||    
T  26744506 aaattcacctactctgaactaaaacatgcaacaaagaatttcagtcaagagattggaaagggtgcttgtggaactgtgtataagggtgttttatctgata 26744407  T
Q  268 atagagttgtggctataaagagactgcatgaagcaaacaaaggagagagtga 319  Q
    || ||||||  || |||||| |  |||||||||| ||  |||||||||||||    
T  26744406 atcgagttgctgcgataaagcgtttgcatgaagcgaatcaaggagagagtga 26744355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 26751431 - 26751280
Alignment:
Q  168 aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgata 267  Q
    ||||||| |||||| ||| | ||||  || |||||| |||||||||||||||| ||||  |||||||||||||||||||||| |||| | |||||||| |    
T  26751431 aaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgctggaggaactgtgtataagggtgttttatctgaca 26751332  T
Q  268 atagagttgtggctataaagagactgcatgaagcaaacaaaggagagagtga 319  Q
    || ||||||  || |||||| |  |||||||||| ||  |||||||||||||    
T  26751331 atcgagttgctgcgataaagcgtttgcatgaagcgaatgaaggagagagtga 26751280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 26737459 - 26737329
Alignment:
Q  198 acaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatg 297  Q
    |||||| ||||||| |||||||||||||  || ||||||||||| |||||||  ||| | ||||||||| || ||||||| || |||||| |  ||||||    
T  26737459 acaaaaggttttagccaagagattggaagaggagctggaggaaccgtgtataaaggtattttatctgatgatcgagttgttgcgataaagcgtttgcatg 26737360  T
Q  298 aagcaaacaaaggagagagtgaatttcttgc 328  Q
    |  ||||  ||||||| ||||| ||||||||    
T  26737359 acacaaatcaaggagacagtgagtttcttgc 26737329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 26714223 - 26714093
Alignment:
Q  198 acaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatg 297  Q
    |||||| ||||||| |||||||||||||  || ||||||||||| |||||||  ||| | ||||||||| || ||||||| || |||||| |  || |||    
T  26714223 acaaaaggttttagccaagagattggaagaggagctggaggaaccgtgtataaaggtattttatctgatgatcgagttgttgcgataaagcgtttgtatg 26714124  T
Q  298 aagcaaacaaaggagagagtgaatttcttgc 328  Q
    |  ||||  ||||||| ||||| ||||||||    
T  26714123 acacaaatcaaggagatagtgagtttcttgc 26714093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 26744655 - 26744562
Alignment:
Q  25 tgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagca 118  Q
    |||||||||||||||||||| |   |||||| || | |||||||  ||| |||||||||||| ||||||| |||||||| ||||| | ||||||    
T  26744655 tgaagttcatgctttggtttgcaagtggcttgggaggaattgagttcttctgcttctttatggtatggtgtttcttattaaagaacaggaagca 26744562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 328
Target Start/End: Complemental strand, 26699101 - 26698941
Alignment:
Q  168 aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgata 267  Q
    ||||||| |||||| ||| |||| |  || |||||| |||||||  ||||||| ||||  || |||||||||||||| ||||  ||| | ||||||||||    
T  26699101 aaattcagttactctgaaataaatcaagctacaaaaggttttagcgaagagatcggaaggggagctggaggaactgtatataaaggtgttttatctgata 26699002  T
Q  268 atagagttgtggctataaagagactgcatgaagcaaacaaaggagagagtgaatttcttgc 328  Q
    || ||||||  || |||||| || ||||||| ||||   |||||| || ||| ||||||||    
T  26699001 atcgagttgctgcgataaagcgattgcatgatgcaattcaaggagggaatgagtttcttgc 26698941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 26734264 - 26734129
Alignment:
Q  168 aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgata 267  Q
    ||||||| |||||| ||| |||| |  || |||||| |||||||  ||||||| ||||  || |||||||||||||| ||||  ||| | ||||||||||    
T  26734264 aaattcagttactctgaaataaatcaagctacaaaaggttttagcgaagagatcggaaggggagctggaggaactgtatataaaggtgttttatctgata 26734165  T
Q  268 atagagttgtggctataaagagactgcatgaagcaa 303  Q
    || ||||||  || |||||| || ||||||| ||||    
T  26734164 atcgagttgctgcgataaagcgattgcatgatgcaa 26734129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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