View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15000_high_13 (Length: 306)
Name: NF15000_high_13
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 301
Target Start/End: Original strand, 31831225 - 31831525
Alignment:
| Q |
1 |
aaatgtgtagtagtatttctaaacttgatactggatttgaccttgctctagaggatttgagcaccagtgtaggtttgaccaaaagaccatccagctggag |
100 |
Q |
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| T |
31831225 |
aaatgtgtagtagtatttctaaacttgaaactggatttgaccatgctctagaggatttgagcaccagtgtaggtttgaccaaaagaccatccagctggag |
31831324 |
T |
|
| Q |
101 |
caacattattggaaacaacagtacgaccatcactagttgtaaccttaaaagacaaactttgaccattgagataattgttgctctgccagttttgtcccca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31831325 |
caacattattggaaacaacagtacgaccatcactagttgtaaccttaaaagacaaactttgaccattgagataattgttgctctgccagttttgtcccca |
31831424 |
T |
|
| Q |
201 |
gtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgtacatctccagcaccaccaacatttgtgataagaactaggttaaaa |
300 |
Q |
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| T |
31831425 |
gtttcttgacatagatatccaaccagtttttgaccctttgatggatgcagcatgtacatctccagcaccaccaacatttgtgataagaactaggttaaaa |
31831524 |
T |
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| Q |
301 |
t |
301 |
Q |
| |
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| |
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| T |
31831525 |
t |
31831525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 47 - 281
Target Start/End: Original strand, 18300386 - 18300620
Alignment:
| Q |
47 |
tctagaggatttgagcaccagtgtaggtttgaccaaaagaccatccagctggagcaacattattggaaacaacagtacgaccatcactagttgtaacctt |
146 |
Q |
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| T |
18300386 |
tctagcggaattgagcaccagtgtaggtttgaccaaaggaccaaccagatggagcaacattgttggaaatgactgttttgccatcacttgttgtaacctt |
18300485 |
T |
|
| Q |
147 |
aaaagacaaactttgaccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggat |
246 |
Q |
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| T |
18300486 |
gaaagacaaagcttggccattaaggtaattgttgctttgccaattttgaccccaatttctagacatttgcatccaccctgatcttgatcctttaatagct |
18300585 |
T |
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| Q |
247 |
gcagcatgtacatctccagcaccaccaacatttgt |
281 |
Q |
| |
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| T |
18300586 |
actgaatgtacatcaccagcaccacccacatttgt |
18300620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 42966804 - 42966678
Alignment:
| Q |
157 |
ctttgaccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgta |
256 |
Q |
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||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||| | ||| ||||| ||||| || |||||||| ||| ||||| |
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| T |
42966804 |
ctttgaccattgagatagttattgctttgccagttctgcccccagttcctagacatagcttgccatccagtctttgatcccttgatggacacagaatgta |
42966705 |
T |
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| Q |
257 |
catctccagcaccaccaacatttgtga |
283 |
Q |
| |
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| T |
42966704 |
catctccagctccaccaacatttgtga |
42966678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 157 - 283
Target Start/End: Complemental strand, 42975226 - 42975100
Alignment:
| Q |
157 |
ctttgaccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgta |
256 |
Q |
| |
|
||||||||||||||||| || ||||| |||||||| || |||||||| || ||||||| | ||| ||||| ||||| || |||||||| ||| ||||| |
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| T |
42975226 |
ctttgaccattgagatagttattgctttgccagttctgcccccagttcctagacatagcttgccatccagtctttgatcccttgatggacacagaatgta |
42975127 |
T |
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| Q |
257 |
catctccagcaccaccaacatttgtga |
283 |
Q |
| |
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|||||||||| |||||||||||||||| |
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| T |
42975126 |
catctccagctccaccaacatttgtga |
42975100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 163 - 296
Target Start/End: Original strand, 27476811 - 27476944
Alignment:
| Q |
163 |
ccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgtacatctc |
262 |
Q |
| |
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||||| |||||| |||||| ||||| ||||| ||||| ||||||||||| | | |||||||||| |||| |||||||||||| || ||| ||||| | |
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| T |
27476811 |
ccattaagataagagttgctttgccaattttggccccaatttcttgacattggttgccaaccagttcttgaccctttgatggatatagaatgaacatccc |
27476910 |
T |
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| Q |
263 |
cagcaccaccaacatttgtgataagaactaggtt |
296 |
Q |
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| T |
27476911 |
cagcaccacctacattggtgaccaaaactaggtt |
27476944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 296
Target Start/End: Original strand, 27488069 - 27488202
Alignment:
| Q |
163 |
ccattgagataattgttgctctgccagttttgtccccagtttcttgacatagatatccaaccagtttttgagcctttgatggatgcagcatgtacatctc |
262 |
Q |
| |
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||||| |||||| |||||| ||||| ||||| ||||| ||||||||||| | | ||| |||||| |||| |||||||||||| || ||| ||||| | |
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| T |
27488069 |
ccattaagataagagttgctttgccaattttgaccccaatttcttgacattggttgccatccagttcttgaccctttgatggatatagaatgaacatccc |
27488168 |
T |
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| Q |
263 |
cagcaccaccaacatttgtgataagaactaggtt |
296 |
Q |
| |
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|||| ||||| ||||| |||| | ||||||||| |
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| T |
27488169 |
cagctccacctacattggtgaccaaaactaggtt |
27488202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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