View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15000_high_14 (Length: 295)

Name: NF15000_high_14
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15000_high_14
NF15000_high_14
[»] chr3 (1 HSPs)
chr3 (16-295)||(51263859-51264137)


Alignment Details
Target: chr3 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 16 - 295
Target Start/End: Original strand, 51263859 - 51264137
Alignment:
Q  16 aattttacctacaaattctttaattgtctatttggttaacttttacttgggagtcactcactacttaataaaataatggttaagataaacgttggcattc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||     
T  51263859 aattttacctacaaattctttaattgtctatttggttaacttttatttgggagtcactctctacttaataaaataatggttaagataaacgttggcattt 51263958  T
Q  116 cgtattgggctgaggtccaacccaagatatgtttcaagctgctctttgcacaaggctcataagaaccatgatatagaccttacataggactgcttgtgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  51263959 cgtattgggctgaggtccaacccaagatatgtttcaagctgctctttgcacaaggctcataggaaccatgatatagaccttacataggactgcttgtgaa 51264058  T
Q  216 taatgatcccagaagttaatttagacagtcagagtatggatccaaggccatcttctcatgatatgctcacaactatccct 295  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  51264059 taatgat-ccagaagttaatttagacagtcggagtatggatccaaggccatcttctcatgatatgctcacaactatccct 51264137  T

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