View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15000_high_15 (Length: 287)
Name: NF15000_high_15
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 5 - 191
Target Start/End: Complemental strand, 10105538 - 10105353
Alignment:
| Q |
5 |
ttgaaagataaaagtgggagaatttgatccctatgataaaatactaactgtatcaataactataaaactcctagttactcctttagacaaagattgtgtt |
104 |
Q |
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| T |
10105538 |
ttgagagataagagttggagaatttgatccctatgataaaatacttactatattaataactacaaaactcctggttactccttcagacaaagattgtgtt |
10105439 |
T |
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| Q |
105 |
aatggaattacgaaggatggatccaagataagctgatctgacacctttatacaactcagtgacctgcaacattcgtttacaaatgac |
191 |
Q |
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| T |
10105438 |
gatggtattacgaaggaaggatcc-agataagctgatctgacacctgtacacaactcagtcacctgcaacattcatttaaaaatgac |
10105353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 155 - 268
Target Start/End: Complemental strand, 10102629 - 10102516
Alignment:
| Q |
155 |
acaactcagtgacctgcaacattcgtttacaaatgacgttggtcaacatgttatgcatgcactataaagtataaatagttattaggcgtcattaaaaaat |
254 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10102629 |
acaactcagtcacctgcaacattcgtttacaaatgacgttggtcaacatgttatgcatgcactataaagtataaatagttattaggcgtcattaaaaaat |
10102530 |
T |
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| Q |
255 |
accaatgaaatatg |
268 |
Q |
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| T |
10102529 |
accaatgaaatatg |
10102516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 4 - 191
Target Start/End: Original strand, 10212739 - 10212922
Alignment:
| Q |
4 |
gttgaaagataaaagtgggagaatttgatccctatgataaaatactaactgtatcaataactataaaactcctagttactcctttagacaaagattgtgt |
103 |
Q |
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| T |
10212739 |
gttgagaggtaagagtgagaaaatttgatccctatcataaaatacttactgtattaataactacaaaactcctagttactcctttaaacaaagattgtgt |
10212838 |
T |
|
| Q |
104 |
taatggaattacgaaggatggatccaagataagctgatctgacacctttatacaactcagtgacctgcaacattcgtttacaaatgac |
191 |
Q |
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| T |
10212839 |
tgatggaattacaaaggatggatc----ataagctgatctaacacctttacgcaactcagtcacctgcaacattcgtttaaaaatgac |
10212922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 89 - 191
Target Start/End: Original strand, 9675292 - 9675394
Alignment:
| Q |
89 |
agacaaagattgtgttaatggaattacgaaggatggatccaagataagctgatctgacacctttatacaactcagtgacctgcaacattcgtttacaaat |
188 |
Q |
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||||||| | |||||| |||||||||| ||||||||||||| ||||| ||||||| ||||||| |||| ||||||||| |||| ||||| ||||| |||| |
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| T |
9675292 |
agacaaacactgtgttgatggaattacaaaggatggatccaggataaactgatctaacaccttcatacgactcagtgatctgcgacattagtttaaaaat |
9675391 |
T |
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| Q |
189 |
gac |
191 |
Q |
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||| |
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| T |
9675392 |
gac |
9675394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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