View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15000_high_16 (Length: 263)
Name: NF15000_high_16
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 256
Target Start/End: Original strand, 51264153 - 51264408
Alignment:
| Q |
1 |
ttcaggtaaaggtttaaggaccaaaaacctaaacctacactataaatacaaactcatgagcattaggtcaggtgtgctcacttttacatgaaaatactta |
100 |
Q |
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| T |
51264153 |
ttcaggtaaaggttcaaggaccaaaaacctaaacctacactataaatacaaactcatgagcattaggtcaggcgtgctcacttttacatgaaaatactta |
51264252 |
T |
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| Q |
101 |
tcattccacaacgcttactaagttgactgccggagtatgtgcaagtacatcatcctcattcgcctggagaagaaggttgcactcatatccggatgaacta |
200 |
Q |
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| T |
51264253 |
tcattccacaacgcttactaagttgaccgccggagtatgtgcaagtacatcatcctcattcgcctggagaagaaggttgcactcatatccggatgaacta |
51264352 |
T |
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| Q |
201 |
ggtgacgactccactaaggacttttcctctagatgatcttgatctacaagcctttg |
256 |
Q |
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| T |
51264353 |
ggtgacgactccactaaggacttttcctctagatgatcttgatctacaagcctttg |
51264408 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 181
Target Start/End: Complemental strand, 11580672 - 11580521
Alignment:
| Q |
30 |
taaacctacactataaatacaaactcatgagcattaggtcaggtgtgctcacttttacatgaaaatacttatcattccacaacgcttactaagttgactg |
129 |
Q |
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| T |
11580672 |
taaacctactctataaatactagctcatggacattaggtcaggtatgctcacttttacccacatacacttatcattccactgcgcttgctaacttgtctg |
11580573 |
T |
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| Q |
130 |
ccggagtatgtgcaagtacatcatcctcattcgcctggagaagaaggttgca |
181 |
Q |
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| T |
11580572 |
tcggagcgtgtgcagatacaccaccctcattcgcccagagaaaaaggctgca |
11580521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 176
Target Start/End: Original strand, 25692205 - 25692378
Alignment:
| Q |
3 |
caggtaaaggtttaaggaccaaaaacctaaacctacactataaatacaaactcatgagcattaggtcaggtgtgctcacttttacatgaaaatacttatc |
102 |
Q |
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||||||||||||| | || ||| ||||||||||| |||||||||| ||| |||| || | ||| |||| |||||||||||| ||||||| |||| |
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| T |
25692205 |
caggtaaaggttttatgagaaaagccctaaacctactctataaatactaacccatggacactgggttaggtacgctcacttttaccctaaaatacctatc |
25692304 |
T |
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| Q |
103 |
attccacaacgcttactaagttgactgccggagtatgtgcaagtacatcatcctcattcgcctggagaagaagg |
176 |
Q |
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| T |
25692305 |
attcaacggcgcctactgacttgaccgtcggagagtgtgcaggtacaccaccctcattcgcccggagaaaaagg |
25692378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 176
Target Start/End: Original strand, 15706710 - 15706787
Alignment:
| Q |
99 |
tatcattccacaacgcttactaagttgactgccggagtatgtgcaagtacatcatcctcattcgcctggagaagaagg |
176 |
Q |
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| T |
15706710 |
tatcattccacggcgcttactgatttgaccgtcggagtatgtgcaggtacaccagccccattcgcccgaagaagaagg |
15706787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 30453879 - 30453927
Alignment:
| Q |
6 |
gtaaaggtttaaggaccaaaaacctaaacctacactataaatacaaact |
54 |
Q |
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|||||||||||| |||||||| ||||||| |||||||||||||| |||| |
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| T |
30453879 |
gtaaaggtttaaagaccaaaaccctaaacatacactataaatactaact |
30453927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 12468723 - 12468765
Alignment:
| Q |
3 |
caggtaaaggtttaaggaccaaaaacctaaacctacactataa |
45 |
Q |
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|||||||||||| ||||||||||| ||||||||||||| |||| |
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| T |
12468723 |
caggtaaaggttcaaggaccaaaaccctaaacctacacaataa |
12468765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 57
Target Start/End: Complemental strand, 16070995 - 16070941
Alignment:
| Q |
2 |
tcaggtaaaggtttaaggaccaaaaacctaaacctacactataaatacaaactcat |
57 |
Q |
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| T |
16070995 |
tcaggtaaaggttcatggaccgaaaac-taaacctacactataaatactaactcat |
16070941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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