View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15000_high_3 (Length: 580)
Name: NF15000_high_3
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 18 - 566
Target Start/End: Complemental strand, 52578691 - 52578140
Alignment:
| Q |
18 |
acgtttgttggggttgannnnnnnagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaatattgtgtcattttctgatgccatcg |
117 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52578691 |
acgtttgttggggttgatttttttagtgtatttcaagaggtttatcttcaaacaaatgatccacgcgtaaccaatattgtgtcattttctgatgccatcg |
52578592 |
T |
|
| Q |
118 |
gtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattccacttcannnnnnnnnn--- |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52578591 |
gtgagctcaaggttgaggtaatactaagtaacttcaattggagctatcataaatttaatacacacttctgtgttaaattctacttcattttttttttttt |
52578492 |
T |
|
| Q |
215 |
-aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgtgaaataaatcatgccacataaattcaaaggttgg |
313 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52578491 |
taatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gtgaaataaatcatgccacataaattcaaaggttgg |
52578393 |
T |
|
| Q |
314 |
ctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatatggatagc |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52578392 |
ctatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatatggatagc |
52578293 |
T |
|
| Q |
414 |
attctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttcatatattt |
513 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52578292 |
attctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttcatatattt |
52578193 |
T |
|
| Q |
514 |
tactattttattctctgatctattgattggtttttcggtagagtcaattgatg |
566 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52578192 |
tactattttattctctgatctattgattggtttttcggtagagtcaattgatg |
52578140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University