View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15000_high_8 (Length: 359)

Name: NF15000_high_8
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15000_high_8
NF15000_high_8
[»] chr8 (4 HSPs)
chr8 (187-312)||(7554471-7554599)
chr8 (48-112)||(7554678-7554742)
chr8 (210-305)||(29526870-29526965)
chr8 (25-58)||(7554755-7554788)
[»] scaffold0181 (1 HSPs)
scaffold0181 (216-323)||(12760-12867)
[»] chr1 (1 HSPs)
chr1 (210-334)||(2091041-2091165)
[»] chr5 (1 HSPs)
chr5 (210-324)||(27528437-27528551)
[»] chr6 (1 HSPs)
chr6 (210-285)||(2853776-2853851)
[»] chr4 (1 HSPs)
chr4 (210-324)||(28943627-28943741)
[»] chr3 (1 HSPs)
chr3 (246-307)||(9706084-9706145)
[»] chr2 (1 HSPs)
chr2 (210-278)||(15318208-15318276)


Alignment Details
Target: chr8 (Bit Score: 93; Significance: 3e-45; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 187 - 312
Target Start/End: Complemental strand, 7554599 - 7554471
Alignment:
Q  187 ctatcaaagatatagaagtttatcaaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacggg---- 282  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||        
T  7554599 ctatcaaagacatagaagtttatcaaggtaaaaatgttatcttttcggtggttgaaggc-ggtctcattacattcgcgttcagctatcatgacgggtggt 7554501  T
Q  283 tggctgcatcttttatcttgtatggatctg 312  Q
    ||||||||||||||||||||||||| ||||    
T  7554500 tggctgcatcttttatcttgtatgggtctg 7554471  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 48 - 112
Target Start/End: Complemental strand, 7554742 - 7554678
Alignment:
Q  48 tatgaaatatttatgttatttttgtataaaaatgagaacgaactaaaattattgaagtagttttg 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7554742 tatgaaatatttatgttatttttgtataaaaatgaaaacgaactaaaattattgaagtagttttg 7554678  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 210 - 305
Target Start/End: Original strand, 29526870 - 29526965
Alignment:
Q  210 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtat 305  Q
    |||||||||| || |||||||    ||||||||||||||||||||||| ||||| || |||||| ||||| |||||  ||||| ||||||||||||    
T  29526870 caaggtaaaattgctatctttctagtggttgaaggcgggtctcattactttcgcttttagctattatgactggtggaggcatcctttatcttgtat 29526965  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 58
Target Start/End: Complemental strand, 7554788 - 7554755
Alignment:
Q  25 gcaattacattcctagagataattatgaaatatt 58  Q
    |||||||||||||||||||||||||||| |||||    
T  7554788 gcaattacattcctagagataattatgatatatt 7554755  T

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Target: scaffold0181 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0181
Description:

Target: scaffold0181; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 216 - 323
Target Start/End: Complemental strand, 12867 - 12760
Alignment:
Q  216 aaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatggatctgatg 315  Q
    ||||||| ||||||| || |||||||||| |  ||| |||||||||||||||| |||||||||| | |||  ||||| |||||||||||||| ||| |||    
T  12867 aaaaatgctatctttccggtggttgaaggtgaatcttattacattcgcgttcaactatcatgactgatggaggcatcatttatcttgtatgggtctaatg 12768  T
Q  316 ttgtaatt 323  Q
    ||||||||    
T  12767 ttgtaatt 12760  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 210 - 334
Target Start/End: Original strand, 2091041 - 2091165
Alignment:
Q  210 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatggat 309  Q
    |||||||||||||  |||||  | |||||||||||||  ||||||||| |||| |||||||||||||||| |||||  |  |  ||||||||||| || |    
T  2091041 caaggtaaaaatgacatcttaccaatggttgaaggcgaatctcattactttcgtgttcagctatcatgactggtggaggtcttctttatcttgtacgggt 2091140  T
Q  310 ctgatgttgtaatttttgttggttt 334  Q
    || |||||||||||| |||| ||||    
T  2091141 ctaatgttgtaatttatgtttgttt 2091165  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 324
Target Start/End: Complemental strand, 27528551 - 27528437
Alignment:
Q  210 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatggat 309  Q
    |||||||||| ||  |||||| |  ||||||||||||  ||||||||| |||| |||||||||||||||| |||||  |  || |||||||||||||| |    
T  27528551 caaggtaaaagtgacatctttcccgtggttgaaggcgaatctcattactttcgtgttcagctatcatgactggtggaggtctcctttatcttgtatgggt 27528452  T
Q  310 ctgatgttgtaattt 324  Q
    || ||| ||||||||    
T  27528451 ctaatgctgtaattt 27528437  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 210 - 285
Target Start/End: Original strand, 2853776 - 2853851
Alignment:
Q  210 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtgg 285  Q
    |||||||||||||||||||||    ||||||||||||| ||||||||| ||||| || | |||||||||| |||||    
T  2853776 caaggtaaaaatgttatctttctagtggttgaaggcggatctcattactttcgcatttaactatcatgactggtgg 2853851  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 210 - 324
Target Start/End: Original strand, 28943627 - 28943741
Alignment:
Q  210 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatggat 309  Q
    ||||||||||||   |||||| || ||||||||||||  |||| |||| |||| |||||||||||||||  |||||  |  || |||||||||||||| |    
T  28943627 caaggtaaaaattacatctttccggtggttgaaggcgaatctccttaccttcgtgttcagctatcatgattggtggaggtctcctttatcttgtatgggt 28943726  T
Q  310 ctgatgttgtaattt 324  Q
    || ||| ||||||||    
T  28943727 ctaatgctgtaattt 28943741  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 307
Target Start/End: Complemental strand, 9706145 - 9706084
Alignment:
Q  246 gggtctcattacattcgcgttcagctatcatgacgggtggctgcatcttttatcttgtatgg 307  Q
    |||||| ||||| ||| ||||||||||||||||| ||||||  |||| |||||||| |||||    
T  9706145 gggtctgattactttcacgttcagctatcatgactggtggcgacatcctttatcttatatgg 9706084  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 210 - 278
Target Start/End: Complemental strand, 15318276 - 15318208
Alignment:
Q  210 caaggtaaaaatgttatcttttcgatggttgaaggcgggtctcattacattcgcgttcagctatcatga 278  Q
    |||||||| |||| ||||||| |  |||||||||||| ||||| | || ||||| ||||||||||||||    
T  15318276 caaggtaataatgctatctttccagtggttgaaggcgagtctcttaactttcgctttcagctatcatga 15318208  T

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