View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15000_low_11 (Length: 334)
Name: NF15000_low_11
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_low_11 |
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| [»] scaffold1297 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 8317030 - 8316728
Alignment:
| Q |
17 |
atgaacagaaatgctgggaaattttatggtggagaacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaaga |
116 |
Q |
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| T |
8317030 |
atgaacagaaatgctgggaaattttatggtggaggacacatggagtaccaattctaattcttctaaggaggtgcagttgaaaagataatgagatgtaaga |
8316931 |
T |
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| Q |
117 |
gcagaaaagaggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcac |
216 |
Q |
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| T |
8316930 |
gcagaaaaggggagctgataaaaagatgaatggatccgaagaatttttactctccgattcaagatgctagagatccaagtattttgaagggatatatcac |
8316831 |
T |
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| Q |
217 |
gcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctt |
316 |
Q |
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| T |
8316830 |
gcttgttattgatcagtaaagaaaatctttccaactccatgcttgagattgaagtaaggagaagtgctctgccaacaaaatttacaaactgctgctcctt |
8316731 |
T |
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| Q |
317 |
ttt |
319 |
Q |
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| T |
8316730 |
ttt |
8316728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1297 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1297
Description:
Target: scaffold1297; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 95 - 210
Target Start/End: Original strand, 2007 - 2125
Alignment:
| Q |
95 |
gaaaagataatgagatgtaagagcagaaaagaggagctgataaaaagatgaatggatccgaagaatttttactctcc---gattcaagatgctagagatc |
191 |
Q |
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| T |
2007 |
gaaaagataatcagatgtactaggagaaaaggggagtttataaaaatatgaatggatcctaagattcttgactctcctattattcaagatggtagagatc |
2106 |
T |
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| Q |
192 |
caagtattttgaagggata |
210 |
Q |
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| T |
2107 |
catgtattttgaagtgata |
2125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 28111704 - 28111777
Alignment:
| Q |
177 |
aagatgctagagatccaagtattttgaagggatatatcacgcttgttattgatcagtaaagaaaatctttccaa |
250 |
Q |
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| T |
28111704 |
aagatgctagagatccatgtattttgaagtgatacacaacgtttgttatagatcacaaaagaaaagttttccaa |
28111777 |
T |
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