View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15000_low_12 (Length: 328)
Name: NF15000_low_12
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_low_12 |
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| [»] chr3 (11 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 11)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 8 - 328
Target Start/End: Original strand, 26690032 - 26690352
Alignment:
| Q |
8 |
cgaagaatatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaag |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
26690032 |
cgaagaaaatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttgtgcttctttatgatatggtggttcttatttaag |
26690131 |
T |
|
| Q |
108 |
aataagaagcactttgttagagataatcaaggctacattcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgtt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690132 |
aataagaagcactttgttagagataatcaaggctacgttcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgtt |
26690231 |
T |
|
| Q |
208 |
ttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26690232 |
ttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaa |
26690331 |
T |
|
| Q |
308 |
aggagagagtgaatttcttgc |
328 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26690332 |
aggagagagtgaatttcttgc |
26690352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 112 - 328
Target Start/End: Original strand, 26731447 - 26731663
Alignment:
| Q |
112 |
agaagcactttgttagagataatcaaggctacattcttgcaggagcaagatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttag |
211 |
Q |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
26731447 |
agaagcactttcttagagataatcaaggctacgttcttgcaggagcaagatttcgaaaattcacttattcggaactaaaacttgcaacaaaatgttttag |
26731546 |
T |
|
| Q |
212 |
tcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaaagga |
311 |
Q |
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|||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26731547 |
tcaagagattggaagtggtgctggaggaactgtgtataagggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaaagga |
26731646 |
T |
|
| Q |
312 |
gagagtgaatttcttgc |
328 |
Q |
| |
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||||||||||||||||| |
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| T |
26731647 |
gagagtgaatttcttgc |
26731663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 10 - 328
Target Start/End: Original strand, 26694192 - 26694513
Alignment:
| Q |
10 |
aagaatatggaccaatgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaa |
109 |
Q |
| |
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||||| ||||| || ||||| | || ||||||||| | ||||||||||||||||||||||| | || || ||||||||||||| |||||||||||||| |
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| T |
26694192 |
aagaaaatggatcagtgaagattatcctttggtttgcgtctggcttaggggtaattgaggcgctatgtttttttatgatatggttcttcttatttaagaa |
26694291 |
T |
|
| Q |
110 |
taagaagcactttgttagagataatcaaggctacattcttgcaggagcaa---gatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgt |
206 |
Q |
| |
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|| |||||||||||| |||||||||||||||| ||||||||||||| | |||||| |||||||||||||||||||||||||| |||||||||||| |
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| T |
26694292 |
tagcgagcactttgttatagataatcaaggctacgttcttgcaggagctacaggatttcaaaaattcacttactcggaactaaaacaagcaacaaaatgt |
26694391 |
T |
|
| Q |
207 |
tttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaaca |
306 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
26694392 |
tttagtcaagagattggaaagggtgctggaggaactgtgtataagggtttattatctgataatagagttgtggctataaagagattgcatgaagcaaaca |
26694491 |
T |
|
| Q |
307 |
aaggagagagtgaatttcttgc |
328 |
Q |
| |
|
||| |||||||||||||||||| |
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|
| T |
26694492 |
aagaagagagtgaatttcttgc |
26694513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 34 - 328
Target Start/End: Complemental strand, 26676026 - 26675729
Alignment:
| Q |
34 |
tgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagcactttgttagagataa |
133 |
Q |
| |
|
||||||||||| | || |||| || |||||||||| || ||||||||||| |||| |||||||||||||||| |||||||| | || | |||| |
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|
| T |
26676026 |
tgctttggtttgcgacttgcttgggagtaattgaggtattgtgcttctttattgcggggtgcttcttatttaagaataggaagcactccgctacaaataa |
26675927 |
T |
|
| Q |
134 |
tcaaggctacattcttgcaggagcaa---gatttcgaaaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggt |
230 |
Q |
| |
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|||||||||||||||||| ||| ||||||| |||||| |||||| ||| | |||| ||||||||| |||| ||||||||||||||||| ||| |
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| T |
26675926 |
acaaggctacattcttgcaatagcccctggatttcgggaattcagttactctgaattgaaacaagcaacaaaaggtttcagtcaagagattggaaagggt |
26675827 |
T |
|
| Q |
231 |
gctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatgaagcaaacaaaggagagagtgaatttcttgc |
328 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||| |||||||||||||| |||| || ||||||||| |||| || || ||||| ||||| |
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| T |
26675826 |
gctggaggaactgtatataaaggtttattatctgataatagggttgtggctataaaacgactacacgaagcaaaccaaggtgaaagagaattccttgc |
26675729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 26744506 - 26744355
Alignment:
| Q |
168 |
aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgata |
267 |
Q |
| |
|
|||||||| ||||| |||||||||| ||||||||| ||| ||||||||||||||||| |||||| | ||||||||||||| |||| | |||||||||| |
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|
| T |
26744506 |
aaattcacctactctgaactaaaacatgcaacaaagaatttcagtcaagagattggaaagggtgcttgtggaactgtgtataagggtgttttatctgata |
26744407 |
T |
|
| Q |
268 |
atagagttgtggctataaagagactgcatgaagcaaacaaaggagagagtga |
319 |
Q |
| |
|
|| |||||| || |||||| | |||||||||| || ||||||||||||| |
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|
| T |
26744406 |
atcgagttgctgcgataaagcgtttgcatgaagcgaatcaaggagagagtga |
26744355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 168 - 319
Target Start/End: Complemental strand, 26751431 - 26751280
Alignment:
| Q |
168 |
aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgata |
267 |
Q |
| |
|
||||||| |||||| ||| | |||| || |||||| |||||||||||||||| |||| |||||||||||||||||||||| |||| | |||||||| | |
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|
| T |
26751431 |
aaattcagttactctgaattgaaacaagctacaaaaggttttagtcaagagatcggaagaggtgctggaggaactgtgtataagggtgttttatctgaca |
26751332 |
T |
|
| Q |
268 |
atagagttgtggctataaagagactgcatgaagcaaacaaaggagagagtga |
319 |
Q |
| |
|
|| |||||| || |||||| | |||||||||| || ||||||||||||| |
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| T |
26751331 |
atcgagttgctgcgataaagcgtttgcatgaagcgaatgaaggagagagtga |
26751280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 26737459 - 26737329
Alignment:
| Q |
198 |
acaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatg |
297 |
Q |
| |
|
|||||| ||||||| ||||||||||||| || ||||||||||| ||||||| ||| | ||||||||| || ||||||| || |||||| | |||||| |
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|
| T |
26737459 |
acaaaaggttttagccaagagattggaagaggagctggaggaaccgtgtataaaggtattttatctgatgatcgagttgttgcgataaagcgtttgcatg |
26737360 |
T |
|
| Q |
298 |
aagcaaacaaaggagagagtgaatttcttgc |
328 |
Q |
| |
|
| |||| ||||||| ||||| |||||||| |
|
|
| T |
26737359 |
acacaaatcaaggagacagtgagtttcttgc |
26737329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 328
Target Start/End: Complemental strand, 26714223 - 26714093
Alignment:
| Q |
198 |
acaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgataatagagttgtggctataaagagactgcatg |
297 |
Q |
| |
|
|||||| ||||||| ||||||||||||| || ||||||||||| ||||||| ||| | ||||||||| || ||||||| || |||||| | || ||| |
|
|
| T |
26714223 |
acaaaaggttttagccaagagattggaagaggagctggaggaaccgtgtataaaggtattttatctgatgatcgagttgttgcgataaagcgtttgtatg |
26714124 |
T |
|
| Q |
298 |
aagcaaacaaaggagagagtgaatttcttgc |
328 |
Q |
| |
|
| |||| ||||||| ||||| |||||||| |
|
|
| T |
26714123 |
acacaaatcaaggagatagtgagtttcttgc |
26714093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 118
Target Start/End: Complemental strand, 26744655 - 26744562
Alignment:
| Q |
25 |
tgaagttcatgctttggtttacttctggcttaggggtaattgaggccttttgcttctttatgatatggtggttcttatttaagaataagaagca |
118 |
Q |
| |
|
|||||||||||||||||||| | |||||| || | ||||||| ||| |||||||||||| ||||||| |||||||| ||||| | |||||| |
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|
| T |
26744655 |
tgaagttcatgctttggtttgcaagtggcttgggaggaattgagttcttctgcttctttatggtatggtgtttcttattaaagaacaggaagca |
26744562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 328
Target Start/End: Complemental strand, 26699101 - 26698941
Alignment:
| Q |
168 |
aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgata |
267 |
Q |
| |
|
||||||| |||||| ||| |||| | || |||||| ||||||| ||||||| |||| || |||||||||||||| |||| ||| | |||||||||| |
|
|
| T |
26699101 |
aaattcagttactctgaaataaatcaagctacaaaaggttttagcgaagagatcggaaggggagctggaggaactgtatataaaggtgttttatctgata |
26699002 |
T |
|
| Q |
268 |
atagagttgtggctataaagagactgcatgaagcaaacaaaggagagagtgaatttcttgc |
328 |
Q |
| |
|
|| |||||| || |||||| || ||||||| |||| |||||| || ||| |||||||| |
|
|
| T |
26699001 |
atcgagttgctgcgataaagcgattgcatgatgcaattcaaggagggaatgagtttcttgc |
26698941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 168 - 303
Target Start/End: Complemental strand, 26734264 - 26734129
Alignment:
| Q |
168 |
aaattcacttactcggaactaaaacttgcaacaaaatgttttagtcaagagattggaaatggtgctggaggaactgtgtataggggtttattatctgata |
267 |
Q |
| |
|
||||||| |||||| ||| |||| | || |||||| ||||||| ||||||| |||| || |||||||||||||| |||| ||| | |||||||||| |
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|
| T |
26734264 |
aaattcagttactctgaaataaatcaagctacaaaaggttttagcgaagagatcggaaggggagctggaggaactgtatataaaggtgttttatctgata |
26734165 |
T |
|
| Q |
268 |
atagagttgtggctataaagagactgcatgaagcaa |
303 |
Q |
| |
|
|| |||||| || |||||| || ||||||| |||| |
|
|
| T |
26734164 |
atcgagttgctgcgataaagcgattgcatgatgcaa |
26734129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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