View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15000_low_19 (Length: 204)

Name: NF15000_low_19
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15000_low_19
NF15000_low_19
[»] chr3 (6 HSPs)
chr3 (20-189)||(51120811-51120980)
chr3 (20-108)||(51113780-51113868)
chr3 (20-173)||(51764374-51764527)
chr3 (19-87)||(27005792-27005860)
chr3 (49-103)||(1657292-1657346)
chr3 (20-173)||(13470666-13470819)
[»] chr5 (5 HSPs)
chr5 (20-173)||(41889488-41889641)
chr5 (20-172)||(32267487-32267636)
chr5 (20-101)||(38267562-38267643)
chr5 (20-100)||(41901542-41901622)
chr5 (18-100)||(37937897-37937979)
[»] chr4 (23 HSPs)
chr4 (42-174)||(553513-553645)
chr4 (20-173)||(3438500-3438652)
chr4 (46-173)||(7225817-7225944)
chr4 (20-107)||(8187091-8187178)
chr4 (24-110)||(1524483-1524569)
chr4 (20-108)||(1548423-1548511)
chr4 (42-173)||(1600453-1600584)
chr4 (20-106)||(8184031-8184117)
chr4 (48-125)||(570391-570468)
chr4 (20-108)||(546925-547013)
chr4 (46-106)||(1519143-1519203)
chr4 (21-107)||(1513407-1513493)
chr4 (20-166)||(55908669-55908815)
chr4 (35-172)||(659736-659873)
chr4 (28-105)||(1545793-1545870)
chr4 (21-106)||(12121458-12121543)
chr4 (64-173)||(53761706-53761815)
chr4 (42-106)||(12116576-12116640)
chr4 (42-105)||(7307894-7307957)
chr4 (20-126)||(532201-532307)
chr4 (21-111)||(1537763-1537853)
chr4 (20-173)||(640927-641080)
chr4 (21-77)||(1508033-1508089)
[»] chr6 (19 HSPs)
chr6 (20-173)||(6402872-6403025)
chr6 (20-173)||(6432173-6432326)
chr6 (48-120)||(12102306-12102378)
chr6 (20-187)||(6585157-6585324)
chr6 (20-128)||(6394876-6394984)
chr6 (20-110)||(6410018-6410108)
chr6 (20-173)||(6594540-6594693)
chr6 (20-187)||(7994102-7994269)
chr6 (49-187)||(11936195-11936333)
chr6 (49-187)||(11948175-11948313)
chr6 (20-173)||(7119169-7119322)
chr6 (20-173)||(7131647-7131800)
chr6 (20-129)||(14820705-14820814)
chr6 (42-105)||(28935083-28935146)
chr6 (20-110)||(6415978-6416068)
chr6 (51-105)||(6423260-6423314)
chr6 (22-108)||(6589322-6589408)
chr6 (20-110)||(14818394-14818484)
chr6 (20-101)||(14802348-14802429)
[»] chr8 (9 HSPs)
chr8 (20-108)||(18315272-18315360)
chr8 (20-106)||(17636402-17636488)
chr8 (32-174)||(34936096-34936238)
chr8 (20-105)||(27922520-27922605)
chr8 (49-187)||(28246215-28246353)
chr8 (48-125)||(21235598-21235675)
chr8 (45-86)||(17628035-17628076)
chr8 (20-108)||(32151313-32151401)
chr8 (50-105)||(17643598-17643653)
[»] chr1 (3 HSPs)
chr1 (20-128)||(19468478-19468586)
chr1 (20-105)||(52082593-52082678)
chr1 (20-105)||(52092789-52092874)
[»] chr2 (3 HSPs)
chr2 (23-106)||(32785773-32785856)
chr2 (20-173)||(1037598-1037751)
chr2 (20-174)||(45245018-45245172)
[»] chr7 (2 HSPs)
chr7 (45-187)||(7977615-7977757)
chr7 (64-173)||(15092085-15092194)
[»] scaffold0295 (1 HSPs)
scaffold0295 (20-128)||(603-711)


Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 189
Target Start/End: Complemental strand, 51120980 - 51120811
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  51120980 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcagtttcac 51120881  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctttg 189  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51120880 tcttgaacaaccggtgaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctttg 51120811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 51113868 - 51113780
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 108  Q
    |||| ||||| ||||| ||| |||||||||||||  ||||||  |||||||  |||||||||| |||| || |||||||||||||||||    
T  51113868 tcttcgagatcacatagagtgtttcatcatcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattcca 51113780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 51764527 - 51764374
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    ||||||||||  |||| ||| ||| |||||||||| |||||   |||||||  ||||||||||  ||  ||||| |||||||||||||| |  | |||||    
T  51764527 tctttgagatcgcatagagtgttttatcatcaacttttgtaaatgacaagtctaacacctccagcttcggaactgcaaagttcattccaagtagcttcac 51764428  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    |||||||||  |||  | |||||| || ||||| ||| ||||||||| ||||||    
T  51764427 tcttgaacattcggataggttcaaatgcctaatcttagaacatctccttaaaac 51764374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 87
Target Start/End: Complemental strand, 27005860 - 27005792
Alignment:
Q  19 atctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttg 87  Q
    ||||||||||||||||| ||| ||  || ||||| ||||||||| ||||||||||| ||||||| ||||    
T  27005860 atctttgagattacataaagtgttgtattatcaattcttgtatgtgacaagttcaagacctccagtttg 27005792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 103
Target Start/End: Original strand, 1657292 - 1657346
Alignment:
Q  49 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttca 103  Q
    ||||||||||||   ||||||| ||||||||||| |||| |||||||||||||||    
T  1657292 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttca 1657346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 13470819 - 13470666
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| | ||| ||| ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||  |||||||||||||| |  | |||||    
T  13470819 tctttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagtagcttcac 13470720  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    | ||  ||||  ||  |||||||| || ||||| ||||||||| ||| ||||||    
T  13470719 ttttttacaataggctaagttcaaatgcctaatcttacaacatatccttaaaac 13470666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 41889641 - 41889488
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    ||||||||||   ||| ||| |||||||||||||| ||||||  || ||||||||||||||||||||| |||||| |||||||||| || |  | |||||    
T  41889641 tctttgagatcttataaagtgtttcatcatcaacttttgtatatgataagttcaacacctccaatttgggaactttaaagttcatttcaagtagcttcac 41889542  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    | ||||||| ||||  |||||||| | |||||||||||||||| ||| ||||||    
T  41889541 tattgaacatccggataagttcaaatatctaatgttacaacatatccttaaaac 41889488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 20 - 172
Target Start/End: Original strand, 32267487 - 32267636
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| | ||| |||  ||||||||||||| |||| || ||||||||||| |||||||||||| |||||||||||||||||   |   |||||||    
T  32267487 tctttgagatcatataaagtgcttcatcatcaactattgtttgtgacaagttcaatacctccaatttgggaacttcaaagttcatt---tctagtttcac 32267583  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaa 172  Q
    | |||||||   ||  |||||||| |||||||||||||||||| ||| |||||    
T  32267584 tgttgaacactgggataagttcaaatgtctaatgttacaacatatccttaaaa 32267636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 101
Target Start/End: Complemental strand, 38267643 - 38267562
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 101  Q
    |||||||||||||||| ||| | |||||||||||||||||||| | ||||| ||||||||| |  ||| |||||||||||||    
T  38267643 tctttgagattacatagagtgtgtcatcatcaactcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagtt 38267562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 100
Target Start/End: Complemental strand, 41901622 - 41901542
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 100  Q
    |||||||||| | ||| |||  ||||||||||||| ||||||  ||||||||||||||||||| |||| ||||||||||||    
T  41901622 tctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt 41901542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 18 - 100
Target Start/End: Original strand, 37937897 - 37937979
Alignment:
Q  18 catctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagt 100  Q
    |||||||||||||||||| ||| ||| |||||||| ||||||||| | ||||| ||||||||| |  ||| ||||||||||||    
T  37937897 catctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaaagt 37937979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 42 - 174
Target Start/End: Original strand, 553513 - 553645
Alignment:
Q  42 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttc 141  Q
    |||||||||||||||||||   ||||||||||||||||||| ||||||||||| |||||||| |  | |    |||||||||||||| | ||| ||||||    
T  553513 ttcatcatcaactcttgtaaatgacaagttcaacacctccagtttgagaactttaaagttcaatgtacgtaacttcactcttgaacagcgggttaagttc 553612  T
Q  142 aagtgtctaatgttacaacatctccataaaaca 174  Q
    || |||||||||||||||||| ||| |||||||    
T  553613 aaatgtctaatgttacaacatgtccttaaaaca 553645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 3438652 - 3438500
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||||||||  ||| ||| |||||||||||||||||| |||||| |||| |||||||||||   ||| |||||||||||| ||  |   |||||    
T  3438652 tctttgagattacatggagtattt-atcatcaactcttgtatgtgacaagctcaatacctccaattttgaaacatcaaagttcattgcacacaaattcac 3438554  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    || | ||||||| |  |||||||| |||||||| ||||||||||||| ||||||    
T  3438553 tcctaaacaaccagctaagttcaaatgtctaatcttacaacatctccttaaaac 3438500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 46 - 173
Target Start/End: Complemental strand, 7225944 - 7225817
Alignment:
Q  46 tcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagt 145  Q
    ||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||     |  | |||||||||| |||   ||  |||||||| |    
T  7225944 tcatcaactcttgtatgtgacaagttcaagacctccaattcgagaacttcaaagttcatgttgcgtagcttcactcttggacagtaggataagttcaaat 7225845  T
Q  146 gtctaatgttacaacatctccataaaac 173  Q
    ||||||| ||||||||||||| ||||||    
T  7225844 gtctaatcttacaacatctccgtaaaac 7225817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 107
Target Start/End: Complemental strand, 8187178 - 8187091
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcc 107  Q
    ||||||| ||| |||| ||| ||| |||||||||||||||||| ||||||||||||||||||| ||||  || |||||||||||||||    
T  8187178 tctttgaaattgcataaagtgttttatcatcaactcttgtatgtgacaagttcaacacctccagtttggaaatttcaaagttcattcc 8187091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 24 - 110
Target Start/End: Complemental strand, 1524569 - 1524483
Alignment:
Q  24 tgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatg 110  Q
    |||||| | ||| ||| ||||||||||||| |||||| | ||||| |||||||||||||| ||| ||||||||||||||||||||||    
T  1524569 tgagatcatatagagtgtttcatcatcaacacttgtacgtgacaaattcaacacctccaaattgggaacttcaaagttcattccatg 1524483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 1548511 - 1548423
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 108  Q
    |||||||||| ||||  ||| ||||||||||||  |||||||| ||||||||||||||||||| |||| ||| ||||||||||| ||||    
T  1548511 tctttgagatcacattgagtgtttcatcatcaatacttgtatgtgacaagttcaacacctccagtttgggaatttcaaagttcagtcca 1548423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 42 - 173
Target Start/End: Original strand, 1600453 - 1600584
Alignment:
Q  42 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttc 141  Q
    |||||| ||||| |||||||  ||||||||||||||||||| ||| ||||||||||||||||||||  || | |||| | |||||||   ||  ||||||    
T  1600453 ttcatcgtcaacccttgtatatgacaagttcaacacctccagtttaagaacttcaaagttcattcctcgcagcttcattattgaacactgggctaagttc 1600552  T
Q  142 aagtgtctaatgttacaacatctccataaaac 173  Q
    || |||||||| ||| || |||||| ||||||    
T  1600553 aaatgtctaattttagaaaatctccttaaaac 1600584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 8184117 - 8184031
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 106  Q
    ||||||||||| |||| |||  |  |||||||||||||||||| ||||||||||||||||| | |||  ||||||||||||||||||    
T  8184117 tctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagtttcggaacttcaaagttcattc 8184031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 570391 - 570468
Alignment:
Q  48 atcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttga 125  Q
    |||||||| |||||  ||||||||||||||||| | |||||||||||||||||||| |||| || |||||||| ||||    
T  570391 atcaactcctgtatatgacaagttcaacacctcgagtttgagaacttcaaagttcaatccacgcagtttcacttttga 570468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 546925 - 547013
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 108  Q
    |||||||||| ||||| ||| |||||||||  ||  ||||| | |||||||||| ||||||||||||  ||||||||||||||||||||    
T  546925 tctttgagatcacatagagtgtttcatcattgacaattgtacgtgacaagttcaccacctccaatttaggaacttcaaagttcattcca 547013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 1519203 - 1519143
Alignment:
Q  46 tcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 106  Q
    |||||||| |||||||| ||||||||||||||||| | |||| ||||||||||||||||||    
T  1519203 tcatcaacccttgtatgtgacaagttcaacacctctagtttgggaacttcaaagttcattc 1519143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 1513493 - 1513407
Alignment:
Q  21 ctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcc 107  Q
    |||||||||||| || ||| |||||||||||||  |||||   |||||||||||||| || | |||| |||||||||||||||||||    
T  1513493 ctttgagattacgtagagtgtttcatcatcaacatttgtaaatgacaagttcaacacttctagtttgggaacttcaaagttcattcc 1513407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 166
Target Start/End: Complemental strand, 55908815 - 55908669
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| | ||| ||| ||||||||||||| | |||||| |||||||| |||||||| ||||   |||||| |||||| |||| | |  |||||||    
T  55908815 tctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcac 55908716  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctcc 166  Q
    |||||||||   ||  || ||||| |||||||  |||||||||||||    
T  55908715 tcttgaacagtaggctaaattcaaatgtctaaccttacaacatctcc 55908669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 172
Target Start/End: Original strand, 659736 - 659873
Alignment:
Q  35 atagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggt 134  Q
    ||||| |||||| || ||| |||||||| ||||||||||||||||| | |||| |||||||||| || ||| |  |  | ||| |||||||||| | ||     
T  659736 atagtgtttcattattaacacttgtatgtgacaagttcaacacctctagtttgggaacttcaaaatttattactcgtagcttccctcttgaacagcaggc 659835  T
Q  135 caagttcaagtgtctaatgttacaacatctccataaaa 172  Q
     ||||| || | |||||||||||||||||||| |||||    
T  659836 taagtttaaatatctaatgttacaacatctccttaaaa 659873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 105
Target Start/End: Original strand, 1545793 - 1545870
Alignment:
Q  28 attacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 105  Q
    |||| ||| ||| ||||||||||||||||||||  | |||||||||||||||||| |||  |||||| ||||||||||    
T  1545793 attatataaagtgtttcatcatcaactcttgtaaacaacaagttcaacacctccagtttaggaactttaaagttcatt 1545870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 106
Target Start/End: Complemental strand, 12121543 - 12121458
Alignment:
Q  21 ctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 106  Q
    ||||||||||||  | ||| |||||||||||||  ||||||  |||||||||||||| || | |||| ||||||||||||||||||    
T  12121543 ctttgagattacggagagtgtttcatcatcaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattc 12121458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 53761815 - 53761706
Alignment:
Q  64 gacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatc 163  Q
    |||||||||||| |||| |  ||| ||||| ||||||||||||||    | ||||||||||||||  |||  |||||||| || ||||||||||||||||    
T  53761815 gacaagttcaacgcctctagcttgggaactacaaagttcattccaattagcttcactcttgaacactcggctaagttcaaatgcctaatgttacaacatc 53761716  T
Q  164 tccataaaac 173  Q
    ||| ||||||    
T  53761715 tccttaaaac 53761706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 12116640 - 12116576
Alignment:
Q  42 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 106  Q
    |||||||||||| |||||||| ||||||||||||||||| || ||  |||| |||||||||||||    
T  12116640 ttcatcatcaacacttgtatgtgacaagttcaacacctctaaatttggaacatcaaagttcattc 12116576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 7307894 - 7307957
Alignment:
Q  42 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 105  Q
    |||||||||||||  |||||  ||||||||||| |||||||||||| |||||| ||||||||||    
T  7307894 ttcatcatcaacttctgtatatgacaagttcaatacctccaatttgggaactttaaagttcatt 7307957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 532201 - 532307
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||| | ||||| || |||||||||||||   ||||||  ||||||||||||||||| |  ||| | |||||||||||||||||| |  | |||||    
T  532201 tctttgaggtcacataaagcttttcatcatcaatgtttgtatatgacaagttcaacacctctagcttggggacttcaaagttcattccaagtagattcac 532300  T
Q  120 tcttgaa 126  Q
    |||||||    
T  532301 tcttgaa 532307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 1537853 - 1537763
Alignment:
Q  21 ctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgc 111  Q
    ||||||||||||| | ||| |||  |||| |||  ||||||  |||||||||||||| || | |||| |||||||||||||||||||||||    
T  1537853 ctttgagattacacacagtgttttgtcattaacatttgtatatgacaagttcaacacttctagtttgggaacttcaaagttcattccatgc 1537763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 640927 - 641080
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||| | || || ||| |||||||||||||  ||||||  ||||||||||||||||||||| |  | | |||||| ||||||||| |  | || ||    
T  640927 tctttgaggtcacgtagagtgtttcatcatcaacgtttgtatctgacaagttcaacacctccaatattggtagttcaaatttcattccaagtaggtttac 641026  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    ||    ||||||||  |||||||| |||||||  ||||||||| ||| ||||||    
T  641027 tccatcacaaccggctaagttcaaatgtctaacattacaacatatccttaaaac 641080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 1508089 - 1508033
Alignment:
Q  21 ctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacac 77  Q
    ||||||||||||| | ||| |||||||||||||  | ||||| ||||||||||||||    
T  1508089 ctttgagattacacacagtgtttcatcatcaacattggtatgtgacaagttcaacac 1508033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 3e-22; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 6402872 - 6403025
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| ||||| ||| |||||||||||||  | ||||  |||||||||||||| || | || | ||||| ||||||| |||||| |  | |||||    
T  6402872 tctttgagatcacatagagtgtttcatcatcaaccttcgtatctgacaagttcaacacttctagttggggaactgcaaagtttattccaagtagcttcac 6402971  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    ||||||||| || || |||||||| || ||||||||||||||||||| ||||||    
T  6402972 tcttgaacacccagttaagttcaaatgcctaatgttacaacatctccttaaaac 6403025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 6432173 - 6432326
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    ||||| |||| ||||| ||| ||||||||||||| |||||||  |||||||||||||||| ||  ||| ||||||||||||||||||||||  | |||||    
T  6432173 tctttaagatcacataaagtgtttcatcatcaacgcttgtatttgacaagttcaacaccttcagcttgggaacttcaaagttcattccatgtagcttcac 6432272  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    | ||  ||||  ||  |||||||| ||| |||  ||||||||||||| ||||||    
T  6432273 ttttatacaataggctaagttcaaatgtttaagtttacaacatctccttaaaac 6432326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 12102306 - 12102378
Alignment:
Q  48 atcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcact 120  Q
    |||||||| |||||| ||||||||||||||||||| |||| ||||||||||||||| ||||||| ||||||||    
T  12102306 atcaactcatgtatgtgacaagttcaacacctccagtttgggaacttcaaagttcaatccatgcagtttcact 12102378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 6585324 - 6585157
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| ||||| ||| |||||||||||||  ||||||  ||||||||||| |||||||| | |  ||||  |||||| |||||| |  | |||||    
T  6585324 tctttgagatcacatagagtgtttcatcatcaacctttgtatctgacaagttcaatacctccaactgggtaactaaaaagtttattccaagtagcttcac 6585225  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 187  Q
    ||||||||| || || |||||||| || ||||| ||| ||||||||| |||||||  || ||||||||    
T  6585224 tcttgaacacccagtaaagttcaaatgcctaatattaaaacatctccttaaaacatgacaaatacctt 6585157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 6394876 - 6394984
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| ||| | ||  ||||||||||||| |||||||  |||||||||||||||||||  | | ||||| ||||||||||||||||  |||||||    
T  6394876 tctttgagatcacagaaagagtttcatcatcaacgcttgtatttgacaagttcaacacctccagctcgggaactgcaaagttcattccatgtagtttcac 6394975  T
Q  120 tcttgaaca 128  Q
    | |||||||    
T  6394976 ttttgaaca 6394984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 6410018 - 6410108
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatg 110  Q
    |||||||||| ||||| ||  ||||||||||||| |||||||  ||| |||||||||||| ||  ||| ||||||||||||||||||||||    
T  6410018 tctttgagatcacataaagagtttcatcatcaacgcttgtatttgactagttcaacaccttcagcttgggaacttcaaagttcattccatg 6410108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 6594693 - 6594540
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| |||  |||| | |||||||||||   |||||  ||||||| ||||||||||| |||| |||||  |||||| ||||||||  | |||||    
T  6594693 tctttgagatcacacgtagtgtctcatcatcaacctctgtatttgacaagtacaacacctccagtttgggaactaaaaagtttattccatgtagcttcac 6594594  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    ||||||||| ||||  |||| ||| ||| |||| ||| ||||||||| ||||||    
T  6594593 tcttgaacacccggataagtacaaatgtgtaatcttataacatctccttaaaac 6594540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 187
Target Start/End: Complemental strand, 7994269 - 7994102
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| ||||||||| |||| |||| ||| |||||||  |||| |||||||||||| |  ||  ||||| |||||||||||||  |  | |||||    
T  7994269 tctttgagatcacatatagtgtttcgtcattaacccttgtatttgacatgttcaacacctctagcttcggaactacaaagttcattcctagtagcttcac 7994170  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaacacaaccaatacctt 187  Q
    ||||| |||| |||  | |||||| || || || ||||||||| ||| ||||||  ||| ||||||||    
T  7994169 tcttgtacaatcggctatgttcaaatgcctgatcttacaacatttccttaaaacgtaacaaatacctt 7994102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 11936333 - 11936195
Alignment:
Q  49 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtc 148  Q
    ||||||||||||   ||||||| ||||||||||| |||| ||||||||||||||| |  | |  | |||| ||||||||| |  || || ||||| ||||    
T  11936333 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtc 11936234  T
Q  149 taatgttacaacatctccataaaacacaaccaatacctt 187  Q
    |||||||||||||| ||  |||||||  | |||||||||    
T  11936233 taatgttacaacatatcattaaaacatgaacaatacctt 11936195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 11948313 - 11948175
Alignment:
Q  49 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtc 148  Q
    ||||||||||||   ||||||| ||||||||||| |||| ||||||||||||||| |  | |  | |||| ||||||||| |  || || ||||| ||||    
T  11948313 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtacgtagcttcagtcttgaacagcgagttaaattcaaatgtc 11948214  T
Q  149 taatgttacaacatctccataaaacacaaccaatacctt 187  Q
    |||||||||||||| ||  |||||||  | |||||||||    
T  11948213 taatgttacaacatatcattaaaacatgaacaatacctt 11948175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 7119169 - 7119322
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||| ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  |||||||||||||| |  | |||||    
T  7119169 tcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggtgaacaacaaagttcattccaagtagcttcac 7119268  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    |||||||||   ||  |||||||| ||| |||| ||| ||||||||| ||||||    
T  7119269 tcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7119322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 173
Target Start/End: Original strand, 7131647 - 7131800
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||| ||||| ||||  ||| |||||||||||||  | ||||  |||||||||||||||||||  | | ||||  |||||||||||||| |  | |||||    
T  7131647 tcttcgagatcacatggagtgtttcatcatcaaccttcgtatctgacaagttcaacacctccagctggcgaacaacaaagttcattccaagtagcttcac 7131746  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    |||||||||   ||  |||||||| ||| |||| ||| ||||||||| ||||||    
T  7131747 tcttgaacagtgggctaagttcaaatgtttaatcttagaacatctccttaaaac 7131800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 14820705 - 14820814
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||| ||||| | ||| ||| |||||| ||||||  ||||||  || |||||||||||||| || ||| ||||| ||||||| ||||||||  |||||||    
T  14820705 tcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgggaactgcaaagttaattccatgtagtttcac 14820804  T
Q  120 tcttgaacaa 129  Q
    || |||||||    
T  14820805 tcctgaacaa 14820814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 42 - 105
Target Start/End: Original strand, 28935083 - 28935146
Alignment:
Q  42 ttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 105  Q
    |||||| |||||||||||||| ||||||||||||||||| | || | |||| ||||| ||||||    
T  28935083 ttcatcgtcaactcttgtatgtgacaagttcaacacctcgagttggggaacatcaaacttcatt 28935146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 6415978 - 6416068
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatg 110  Q
    |||||||||| ||||| ||  ||| ||||| |||  ||||||  |||||||||||||||||||  ||| ||||| |||||| |||||||||    
T  6415978 tctttgagatcacatagagagttttatcattaacctttgtatttgacaagttcaacacctccaggttgggaactacaaagtccattccatg 6416068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 6423260 - 6423314
Alignment:
Q  51 aactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 105  Q
    |||||||||||  |||||||||||||||||||  ||| |||||| ||||||||||    
T  6423260 aactcttgtatttgacaagttcaacacctccagcttgggaacttaaaagttcatt 6423314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 108
Target Start/End: Complemental strand, 6589408 - 6589322
Alignment:
Q  22 tttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 108  Q
    |||||||| | ||||||| ||| ||||| |||  ||||||  |||||||||||||||||||   || ||||| ||||||||||||||    
T  6589408 tttgagatcagatatagtgttttatcattaacatttgtatttgacaagttcaacacctccagcatgggaactacaaagttcattcca 6589322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 110
Target Start/End: Original strand, 14818394 - 14818484
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatg 110  Q
    |||| ||||| | ||| ||| |||||| ||||||  ||||||  || |||||||||||||| || ||||||||| ||||||| ||||||||    
T  14818394 tcttggagatcatataaagtgtttcattatcaacctttgtatttgataagttcaacacctctaacttgagaactgcaaagttaattccatg 14818484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 101
Target Start/End: Original strand, 14802348 - 14802429
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagtt 101  Q
    ||||||| || ||||| ||| |||||||||||||  ||||||  ||||| |||||||| ||||  ||| |||||||||||||    
T  14802348 tctttgaaatcacatagagtgtttcatcatcaacctttgtatttgacaaattcaacacttccatcttgggaacttcaaagtt 14802429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 108
Target Start/End: Complemental strand, 18315360 - 18315272
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 108  Q
    |||||||||| ||||| |||  ||||||||||||| ||||||| ||||||||||||||||||| |||| |||||| |||||||||||||    
T  18315360 tctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattcca 18315272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 17636488 - 17636402
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 106  Q
    |||||||||| ||||| | |  |||||| ||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||    
T  17636488 tctttgagatcacatacaatgcttcatcgtcaactcctgtttgtgacaagttcaacacctccaatttgggaacttcaaagttcattc 17636402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 32 - 174
Target Start/End: Complemental strand, 34936238 - 34936096
Alignment:
Q  32 catatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaacc 131  Q
    |||| ||| ||| |||||||||||||||||  ||||||| ||||||||| | |||  |||| |||||| ||||||  ||  | |||||| |||||||| |    
T  34936238 catagagtgttttatcatcaactcttgtatatgacaagtccaacacctctagttttggaacatcaaagatcattctgtgaaggttcacttttgaacaatc 34936139  T
Q  132 ggtcaagttcaagtgtctaatgttacaacatctccataaaaca 174  Q
    || ||||| ||| |||||||||| ||||||||||| |||||||    
T  34936138 ggccaagtacaaatgtctaatgtcacaacatctccttaaaaca 34936096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 27922520 - 27922605
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 105  Q
    |||||||||| | ||| |||  ||||||||||||  ||||||  |||||||||||||||||||||||| |||||||||||||||||    
T  27922520 tctttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctccaatttgggaacttcaaagttcatt 27922605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 187
Target Start/End: Complemental strand, 28246353 - 28246215
Alignment:
Q  49 tcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtc 148  Q
    ||||||||||||   ||||||| ||||||||||| |||| ||||||||||||||| |  |||  | |||| |||||||||||  || || ||||| ||||    
T  28246353 tcaactcttgtaaatgacaagtccaacacctccagtttgggaacttcaaagttcaatgtatgtagcttcagtcttgaacaacgagttaaattcaaatgtc 28246254  T
Q  149 taatgttacaacatctccataaaacacaaccaatacctt 187  Q
    |||||||||||||| ||  |||||||  | |||||||||    
T  28246253 taatgttacaacatatcattaaaacatgaacaatacctt 28246215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 21235598 - 21235675
Alignment:
Q  48 atcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttga 125  Q
    |||||||| |||||  ||||||||||||||||||| |||| ||||||||||||||| ||||  | |||||||| ||||    
T  21235598 atcaactcctgtatatgacaagttcaacacctccagtttgggaacttcaaagttcactccacacagtttcacttttga 21235675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 86
Target Start/End: Complemental strand, 17628076 - 17628035
Alignment:
Q  45 atcatcaactcttgtatgcgacaagttcaacacctccaattt 86  Q
    |||||||||||| ||||| |||||||||||||||||||||||    
T  17628076 atcatcaactctagtatgtgacaagttcaacacctccaattt 17628035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 32151313 - 32151401
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattcca 108  Q
    |||||||||| ||||| ||| ||||||||||||  ||||||   |||||||| ||||||||||  |||  |||||| ||||||||||||    
T  32151313 tctttgagatcacatagagtgtttcatcatcaaaccttgtacatgacaagtttaacacctccagattggaaacttcgaagttcattcca 32151401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 17643653 - 17643598
Alignment:
Q  50 caactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 105  Q
    |||||||||| || |||||||||||| ||||||||||| ||||| ||| |||||||    
T  17643653 caactcttgtttgtgacaagttcaacgcctccaatttgggaactccaacgttcatt 17643598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 19468586 - 19468478
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| ||||| ||| |||||||||||||  ||||||  ||||| |||||||||||||  ||| ||||| ||||||||| |||| |  | |||||    
T  19468586 tctttgagatcacataaagtgtttcatcatcaacctttgtatctgacaacttcaacacctccagcttgggaactacaaagttcactccaagtagattcac 19468487  T
Q  120 tcttgaaca 128  Q
    |||||||||    
T  19468486 tcttgaaca 19468478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 52082593 - 52082678
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 105  Q
    |||||||||| ||||| | | |||||||||||| | |||| |  ||||||||||||||||||||||||  ||||| ||||||||||    
T  52082593 tctttgagatcacatacaatgtttcatcatcaatttttgtctttgacaagttcaacacctccaatttggaaacttgaaagttcatt 52082678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 52092789 - 52092874
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcatt 105  Q
    |||||||||| ||||| | | | |||||||||| | |||| |  | ||||||||||||||||||||||  ||||| ||||||||||    
T  52092789 tctttgagatcacatacaatgtgtcatcatcaatttttgtctttgccaagttcaacacctccaatttggaaacttgaaagttcatt 52092874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 23 - 106
Target Start/End: Complemental strand, 32785856 - 32785773
Alignment:
Q  23 ttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattc 106  Q
    ||||||| ||||| |||  ||||||||||| ||||||||| ||||||||||||||||| | |||| || ||| |||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttgggagctttaaagttcattc 32785773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 1037751 - 1037598
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| | ||| ||| ||||||||||||| | |||||| |||||||| |||||||| ||||   |||||| |||||| |||| | |  |||||||    
T  1037751 tctttgagatcatatagagtgtttcatcatcaacacatgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcac 1037652  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaac 173  Q
    ||||||| |   ||  || ||||| |||||||  ||||||||||||| ||||||    
T  1037651 tcttgaatagtaggctaaattcaaatgtctaaccttacaacatctccttaaaac 1037598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 174
Target Start/End: Complemental strand, 45245172 - 45245018
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||||||||| ||||  ||| |||||||||||||  |||| |  ||||| ||||||||||| | |||  ||||||||||||| |||||| |   || ||     
T  45245172 tctttgagatcacatggagtgtttcatcatcaaccattgtctctgacaaattcaacacctcaagttttggaacttcaaagtttattccacgtaattccag 45245073  T
Q  120 tcttgaacaaccggtcaagttcaagtgtctaatgttacaacatctccataaaaca 174  Q
    ||||||||| |     ||||| || || ||||||||||||||||||| |||||||    
T  45245072 tcttgaacagcaaactaagtttaaatgcctaatgttacaacatctccttaaaaca 45245018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 45 - 187
Target Start/End: Original strand, 7977615 - 7977757
Alignment:
Q  45 atcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaag 144  Q
    |||||||||| ||||||| |||||||||||  |||| | ||||  ||| || || ||||||||| |  | ||||| |||||||||| ||  | ||| ||     
T  7977615 atcatcaactgttgtatgtgacaagttcaaagcctcgagtttgcaaacgtcgaatttcattccacgtagattcacccttgaacaacaggctaggtttaaa 7977714  T
Q  145 tgtctaatgttacaacatctccataaaacacaaccaatacctt 187  Q
    |||||||||||||||||||||| ||||||   |||||||||||    
T  7977715 tgtctaatgttacaacatctccttaaaacttgaccaatacctt 7977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 173
Target Start/End: Complemental strand, 15092194 - 15092085
Alignment:
Q  64 gacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcactcttgaacaaccggtcaagttcaagtgtctaatgttacaacatc 163  Q
    ||||| |||||||||||||  | | ||||| ||||||||||||||||  ||||||| ||| |||| || || |||||||| ||| |||  ||| |||||     
T  15092194 gacaaattcaacacctccagctcgggaactgcaaagttcattccatgtagtttcacacttaaacatccagttaagttcaaatgtttaagcttataacatt 15092095  T
Q  164 tccataaaac 173  Q
    ||| ||||||    
T  15092094 tccttaaaac 15092085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 711 - 603
Alignment:
Q  20 tctttgagattacatatagtttttcatcatcaactcttgtatgcgacaagttcaacacctccaatttgagaacttcaaagttcattccatgcggtttcac 119  Q
    |||| ||||| | ||| ||| |||||||||| || |||||||| |||||||| |||||||| ||||   |||||| |||||| |||| | |  |||||||    
T  711 tcttcgagatcatatagagtgtttcatcatcgacacttgtatgtgacaagttaaacacctctaattcaggaactttaaagtttattctaagtagtttcac 612  T
Q  120 tcttgaaca 128  Q
    |||||||||    
T  611 tcttgaaca 603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University