View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15000_low_4 (Length: 529)
Name: NF15000_low_4
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 154 - 518
Target Start/End: Complemental strand, 33462221 - 33461861
Alignment:
| Q |
154 |
gtaagttttagtggttaatttatcatgattaatatgtaattgatatataaaatatttgcaggtttgataacatgttgtttaccatgcatcacatttggcc |
253 |
Q |
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| T |
33462221 |
gtaagttttagtggttaatttatcatgattaatatgtaattgatatataaaatatttgcaggtttgataacatgttgtttaccatgcatcacatttggcc |
33462122 |
T |
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| Q |
254 |
aaattgcagaagttgtggatgaaggacgtagttgtaagtacacaacattaaatacctatttttctatatatatatgtactcaaaatatgtatactttgat |
353 |
Q |
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| T |
33462121 |
aaattgcagaagttgtggatgaaggacgtagttgtaagtacacaacattaaatacctatttttctatatata----tactcaaaatatgtatactttgat |
33462026 |
T |
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| Q |
354 |
tcatgatatttctaattaatgaatgcagcttgtgctatgcaaggatgtgtatacggtttactgatgaccattacatgtcattggctatactcatgtcttt |
453 |
Q |
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| T |
33462025 |
tcatgatattttgaattaatgaatgcagcttgtgctatgcaaggatgtgtatacggtttactgatgaccattacatgtcattggctatactcatgtcttt |
33461926 |
T |
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| Q |
454 |
acagagagaaattgagagcaaagtatggtttaccagcagaaccttgttgtgattgttgtgttcat |
518 |
Q |
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| T |
33461925 |
acagagagaaactgagagcaaaatatggtttaccagctgaaccatgttgtgattgttgtgttcat |
33461861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 18 - 113
Target Start/End: Complemental strand, 33462389 - 33462294
Alignment:
| Q |
18 |
agttataacatgaacatctttggtcgttcttccccacctaaatggtcagctaaattatgtggatgtggagaaaacccaggaacatgtaagatcaat |
113 |
Q |
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| T |
33462389 |
agttataacatgaacatctttggtcgttcttccccacctaaatggtcagctaaattatgtggctgtggagaaaacccaggaacatgtaagatcaat |
33462294 |
T |
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