View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15000_low_5 (Length: 522)
Name: NF15000_low_5
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_low_5 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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| [»] scaffold0046 (2 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 7 - 521
Target Start/End: Complemental strand, 16390787 - 16390283
Alignment:
| Q |
7 |
gaagcaaaggcataattgagagatgaacnnnnnnnntatattattgagatgtaaaaataatattacaattttactaataaaagttagtgcttcctacatt |
106 |
Q |
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||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16390787 |
gaagccaaggcataattgagagatgaacaaaaaaa--atattattgagatgtaaaaataatattacaattttactaataaaagttagtgcttcctacatt |
16390690 |
T |
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| Q |
107 |
ataatgaattttgagtctaaatctgatatgattgtatattggcgtataattttttcttgtggttacgattttatgaaaagtttaaatgtggacgctctta |
206 |
Q |
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|||||||||| ||||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||| |||||||||| | |||||||||||| |
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| T |
16390689 |
ataatgaattgtgagtctaaatgtgatatgattgtatattggcgtataaatttt-cttgttgttacgattttgtgaaaagttttac-gtggacgctcttg |
16390592 |
T |
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| Q |
207 |
tggttgcattagcagcgaagctagccaatttttgtacggggtgagcaaatatcatannnnnnnnaaaattaatatattaaatttaatttataatnnnnnn |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| || || | | ||||||||||||||||||||||||||||| |
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| T |
16390591 |
tggttgcattagcagcgaagctagccaatttttgtacggggtga-cagatttttttttt------aaattaatatattaaatttaatttataataaaaaa |
16390499 |
T |
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| Q |
307 |
n-tcacaaccatttcactgatataaaatgtaatttaaataacataaaatatagctatttattgacaaaaatgagctcaacaacctttcaaagagtcaaac |
405 |
Q |
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|||||||||||||| ||||||||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16390498 |
aatcacaaccatttcaatgatataaaatgtaaatcaaataacataaaaaatagctatttataaacaaaaatgagctcaacaacctttcaaagagtcaaac |
16390399 |
T |
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| Q |
406 |
tcatctgtaattgctaataatattactcccaaaattataagtgaatataagcaaaactatcacatattttgaaataactgtcaatagtaagaatgataag |
505 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16390398 |
tcatctgtaattgctaataatattactcccaaaattataagtgaatataagcaaaactatcacatattttgaaataactgtcaatagtaagaatgataag |
16390299 |
T |
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| Q |
506 |
aagggcaaagggattg |
521 |
Q |
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||||| |||||||||| |
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| T |
16390298 |
aagggtaaagggattg |
16390283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 46 - 430
Target Start/End: Original strand, 1996279 - 1996641
Alignment:
| Q |
46 |
attattgagatgtaaaaataatattacaattttactaataaaagttagtgcttcctacattataatgaattttgagtctaaatctgatatgattgtatat |
145 |
Q |
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||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||| |
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| T |
1996279 |
attattgagatgtaaaaataatattg-aattttatcaataaaagttagtgcttcctacattataatgaattgtgagtctaaatctgatacgattatata- |
1996376 |
T |
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| Q |
146 |
tggcgtataattttttcttgtggttacgattttatgaaaagtttaaatgtggacgctcttatggttgcattagcagcgaagctagccaatttttgtacgg |
245 |
Q |
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|| |||||| |||||||||||||| ||||||||||| | ||| || |||| ||||||||| || |||||||||||||| ||||||| || |
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| T |
1996377 |
--------aa--ttttctagtggttacgattttttgaaaagtttatacgtgaacagtcttgtggttgcatcagtggcgaagctagccaa-ttttgtatgg |
1996465 |
T |
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| Q |
246 |
ggtgagcaaatatcatannnnnnnnaaaattaatatattaaatttaatttataatnnnnnnntcacaaccatttcactgatataaaatgtaatttaaa-t |
344 |
Q |
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|||| ||| || | | |||||||||||||| ||||||| | || | |||| ||||| ||||||| ||||||||| |||| | |
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| T |
1996466 |
ggtggctaaacatgagaattttttaaaaattaatatattcaatttaa---aaaa-------ataacaatcattttactgatagaaaatgtaaactaaagt |
1996555 |
T |
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| Q |
345 |
aacataaaatatagctatttattgacaaaaatgagctcaacaacctttcaaagagtcaaactcatctgtaattgctaataatatta |
430 |
Q |
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| T |
1996556 |
aacataaaaaatttctatttataaaaataaattagctcaacaaccttttaaagagtcaaattcatctataattgctaataatatta |
1996641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 471 - 522
Target Start/End: Original strand, 16208880 - 16208931
Alignment:
| Q |
471 |
attttgaaataactgtcaatagtaagaatgataagaagggcaaagggattgc |
522 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16208880 |
attttgaaataactgtcaatagtaagaatgataagaagggcaaagggattgc |
16208931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 472 - 522
Target Start/End: Original strand, 22405762 - 22405812
Alignment:
| Q |
472 |
ttttgaaataactgtcaatagtaagaatgataagaagggcaaagggattgc |
522 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22405762 |
ttttgaaataactatcaatagtaagaatgataagaagggcaaagggattgc |
22405812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 271 - 343
Target Start/End: Original strand, 32822735 - 32822807
Alignment:
| Q |
271 |
aaaattaatatattaaatttaatttataatnnnnnnntcacaaccatttcactgatataaaatgtaatttaaa |
343 |
Q |
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|||||||||||||||| ||||||| ||||| |||||| ||||| ||||||||||||||||| ||||| |
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| T |
32822735 |
aaaattaatatattaagtttaattcataataaaaaaatcacaatcattttactgatataaaatgtaaattaaa |
32822807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046 (Bit Score: 44; Significance: 8e-16; HSPs: 2)
Name: scaffold0046
Description:
Target: scaffold0046; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 471 - 522
Target Start/End: Complemental strand, 3253 - 3202
Alignment:
| Q |
471 |
attttgaaataactgtcaatagtaagaatgataagaagggcaaagggattgc |
522 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||| |
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| T |
3253 |
attttgaaataactgtcaatagtaagaatcataagaagggcaaatggattgc |
3202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0046; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 471 - 513
Target Start/End: Complemental strand, 22886 - 22844
Alignment:
| Q |
471 |
attttgaaataactgtcaatagtaagaatgataagaagggcaa |
513 |
Q |
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| T |
22886 |
attttgaaataactgtcaatagtaagaatgataagaagggcaa |
22844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 471 - 522
Target Start/End: Original strand, 111258 - 111309
Alignment:
| Q |
471 |
attttgaaataactgtcaatagtaagaatgataagaagggcaaagggattgc |
522 |
Q |
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||||||||||| |||||| |||||||||||||||||| || ||||||||||| |
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| T |
111258 |
attttgaaatagctgtcagtagtaagaatgataagaaaggaaaagggattgc |
111309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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