View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15000_low_6 (Length: 437)
Name: NF15000_low_6
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15000_low_6 |
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| [»] scaffold0082 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 16 - 302
Target Start/End: Original strand, 4194499 - 4194787
Alignment:
| Q |
16 |
atcacgcaaatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgt |
113 |
Q |
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| T |
4194499 |
atcacgcaaatagatggaaattataggcgacttatcacagcttccagctcagaaaaggtgtaaagatgatatgctggagcaaccttcgctatgtcaacgt |
4194598 |
T |
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| Q |
114 |
tgttgggagtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaact |
213 |
Q |
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| T |
4194599 |
tgttgggagtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagcaagggggcaaacaacttgaagtccatgcatatgaatttaact |
4194698 |
T |
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| Q |
214 |
tttaccttctctcccataacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcacaacataataaat |
302 |
Q |
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| T |
4194699 |
tttaccttctctcccattacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcacaacataataaat |
4194787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 302 - 386
Target Start/End: Original strand, 4196457 - 4196541
Alignment:
| Q |
302 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggcccc |
386 |
Q |
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| T |
4196457 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggcccc |
4196541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 23 - 291
Target Start/End: Complemental strand, 50772725 - 50772454
Alignment:
| Q |
23 |
aaatagatggaaattataggcgacttatcacagcttccagctcagaaggggtgtaaa--tgatacgctggagcaaccttcgcaatgccaacgttgttggg |
120 |
Q |
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|||||||||||||| |||||||||||||||||||||||| |||||| ||||| |||| |||||||||||||||||| | |||||| ||||||||||||| |
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| T |
50772725 |
aaatagatggaaatcataggcgacttatcacagcttccacctcagacggggtataaagatgatacgctggagcaaccctggcaatgtcaacgttgttggg |
50772626 |
T |
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| Q |
121 |
agtgacctaatgtgaaagtacggaggaaacaagttagaatttattctcagca-agggggcaaacaacttgaagt-ccatgcatatgaatttaacttttac |
218 |
Q |
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| T |
50772625 |
agtgacctaatgtgaaagtacagaagaaacaagttagaatttattctcagtagggggggcaaacaactggaagtaagatgcatttggttttaac-tttac |
50772527 |
T |
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| Q |
219 |
cttctctcccataacttgcttcagaattgataaagcaatagtctcagctttttcaagagttaagtcctgcaca |
291 |
Q |
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| T |
50772526 |
cttctcttccataacttgcttcaggattgataaagcaatagtctcagcttcttgaagagttaagtcctgcaca |
50772454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0082 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: scaffold0082
Description:
Target: scaffold0082; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 302 - 386
Target Start/End: Complemental strand, 3877 - 3793
Alignment:
| Q |
302 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggcccc |
386 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3877 |
ttggtgcctctctataccctttatggtcttgatcttttcctccaagctctctaaattgtctaccaccttcttatgttctggcccc |
3793 |
T |
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