View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15000_low_7 (Length: 425)

Name: NF15000_low_7
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15000_low_7
NF15000_low_7
[»] chr1 (18 HSPs)
chr1 (209-334)||(36417947-36418068)
chr1 (331-408)||(36417845-36417922)
chr1 (13-72)||(36418217-36418276)
chr1 (38-72)||(49453615-49453649)
chr1 (170-206)||(10384209-10384245)
chr1 (171-207)||(39788765-39788801)
chr1 (38-72)||(2362507-2362541)
chr1 (170-208)||(35883644-35883682)
chr1 (170-208)||(50226916-50226954)
chr1 (170-224)||(50528094-50528148)
chr1 (170-207)||(6829820-6829857)
chr1 (171-204)||(32938859-32938892)
chr1 (170-207)||(37843469-37843506)
chr1 (170-206)||(18610771-18610807)
chr1 (170-206)||(25302680-25302716)
chr1 (174-206)||(41885719-41885751)
chr1 (170-206)||(49453489-49453525)
chr1 (170-206)||(50797789-50797825)
[»] chr5 (13 HSPs)
chr5 (38-72)||(2117539-2117573)
chr5 (170-206)||(125090-125126)
chr5 (170-205)||(4954465-4954500)
chr5 (38-69)||(12349926-12349957)
chr5 (38-72)||(11306834-11306868)
chr5 (170-204)||(15918027-15918061)
chr5 (38-72)||(39595412-39595446)
chr5 (38-72)||(43482503-43482537)
chr5 (170-207)||(23991171-23991208)
chr5 (170-206)||(611862-611898)
chr5 (170-206)||(1774320-1774356)
chr5 (170-210)||(14780458-14780498)
chr5 (170-206)||(28811427-28811463)
[»] chr4 (21 HSPs)
chr4 (38-72)||(36408103-36408137)
chr4 (38-72)||(36413226-36413260)
chr4 (170-208)||(41262655-41262693)
chr4 (38-72)||(42915118-42915152)
chr4 (170-210)||(4896537-4896577)
chr4 (170-206)||(38864773-38864809)
chr4 (38-72)||(5234370-5234404)
chr4 (170-204)||(19174800-19174834)
chr4 (38-72)||(31275284-31275318)
chr4 (170-208)||(46173546-46173584)
chr4 (170-204)||(51039153-51039187)
chr4 (38-72)||(51389454-51389488)
chr4 (174-207)||(5234501-5234534)
chr4 (170-207)||(9162063-9162100)
chr4 (170-207)||(33093141-33093178)
chr4 (170-206)||(3222987-3223023)
chr4 (171-207)||(18568473-18568509)
chr4 (171-207)||(24235317-24235353)
chr4 (170-206)||(31221411-31221447)
chr4 (170-206)||(44368239-44368275)
chr4 (170-206)||(51296226-51296262)
[»] chr3 (14 HSPs)
chr3 (38-72)||(29706041-29706075)
chr3 (38-72)||(7231905-7231939)
chr3 (38-72)||(11173588-11173622)
chr3 (38-72)||(46953087-46953121)
chr3 (171-208)||(108427-108464)
chr3 (170-206)||(1901963-1901999)
chr3 (170-206)||(1911409-1911445)
chr3 (170-206)||(7867748-7867784)
chr3 (170-206)||(18169155-18169191)
chr3 (174-206)||(29800590-29800622)
chr3 (38-66)||(32687858-32687886)
chr3 (170-206)||(35272025-35272061)
chr3 (170-206)||(48945845-48945881)
chr3 (170-206)||(52454131-52454167)
[»] chr2 (16 HSPs)
chr2 (38-72)||(11164275-11164309)
chr2 (171-208)||(42607557-42607594)
chr2 (38-72)||(3091879-3091913)
chr2 (170-208)||(5067683-5067721)
chr2 (38-72)||(12600186-12600220)
chr2 (170-204)||(21490703-21490737)
chr2 (170-208)||(33296108-33296146)
chr2 (38-72)||(36133112-36133146)
chr2 (170-207)||(29871389-29871426)
chr2 (43-72)||(39285991-39286020)
chr2 (170-206)||(4738609-4738645)
chr2 (170-206)||(14140374-14140410)
chr2 (170-206)||(19695717-19695753)
chr2 (174-206)||(23391070-23391102)
chr2 (170-206)||(27307268-27307304)
chr2 (170-206)||(42283276-42283312)
[»] chr8 (13 HSPs)
chr8 (170-206)||(40413375-40413411)
chr8 (171-206)||(6004942-6004977)
chr8 (170-204)||(7596928-7596962)
chr8 (38-72)||(7678870-7678904)
chr8 (38-72)||(21273609-21273643)
chr8 (38-71)||(9046970-9047003)
chr8 (170-207)||(22852876-22852913)
chr8 (170-207)||(36497658-36497695)
chr8 (38-71)||(44672132-44672165)
chr8 (174-206)||(69632-69664)
chr8 (174-206)||(23952492-23952524)
chr8 (170-206)||(28927679-28927715)
chr8 (170-206)||(45101394-45101430)
[»] chr7 (13 HSPs)
chr7 (172-208)||(27778075-27778111)
chr7 (38-72)||(6353867-6353901)
chr7 (38-72)||(8792499-8792533)
chr7 (38-72)||(12142022-12142056)
chr7 (170-208)||(22330657-22330695)
chr7 (38-72)||(32428206-32428240)
chr7 (38-72)||(32933685-32933719)
chr7 (170-203)||(24044773-24044806)
chr7 (170-207)||(41227064-41227101)
chr7 (170-207)||(41985126-41985163)
chr7 (170-206)||(2469701-2469737)
chr7 (170-206)||(37352016-37352052)
chr7 (171-207)||(41966329-41966365)
[»] chr6 (9 HSPs)
chr6 (170-206)||(12441536-12441572)
chr6 (174-205)||(10521125-10521156)
chr6 (38-72)||(32253919-32253953)
chr6 (38-72)||(32853043-32853077)
chr6 (170-206)||(1196056-1196092)
chr6 (171-203)||(12501475-12501507)
chr6 (170-206)||(15722540-15722576)
chr6 (170-206)||(27334856-27334892)
chr6 (170-206)||(27395596-27395632)
[»] scaffold0115 (1 HSPs)
scaffold0115 (38-72)||(15088-15122)
[»] scaffold0036 (1 HSPs)
scaffold0036 (38-72)||(18141-18175)
[»] scaffold0018 (1 HSPs)
scaffold0018 (174-206)||(36000-36032)
[»] scaffold0011 (1 HSPs)
scaffold0011 (170-206)||(219701-219737)


Alignment Details
Target: chr1 (Bit Score: 96; Significance: 6e-47; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 209 - 334
Target Start/End: Complemental strand, 36418068 - 36417947
Alignment:
Q  209 atgaatcataacttttcacaaaacactaattagatagattcttggttatagatgtgacaagtaaaagagaatgttcaattttggagtggtgtaagattag 308  Q
    |||||||||||| |||||||||||||||||||||||  ||||||||||||||||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  36418068 atgaatcataacgtttcacaaaacactaattagata--ttcttggttatagatgtaacaagtaa--gagaatgttcaattttggagtggtgtaagattag 36417973  T
Q  309 aaaggtgagggaaaagtcatgaacca 334  Q
    ||||||||||||||||||||||||||    
T  36417972 aaaggtgagggaaaagtcatgaacca 36417947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 331 - 408
Target Start/End: Complemental strand, 36417922 - 36417845
Alignment:
Q  331 accattgcctacatgaacccgatttaatccagacaagtatgttgcactaaggttataaaaaatacgccgtcattgaat 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  36417922 accattgcctacatgaacccgatttaatccagacaagtatgttgcaccaaggttataaaaaatacgccgtcattgaat 36417845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 36418276 - 36418217
Alignment:
Q  13 atactcaagaatacctcttagaaggatttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  36418276 atacccaagaataccttttagaaggatttgaacaactatttgatacaacttttgtgacaa 36418217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 49453649 - 49453615
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||||||||||    
T  49453649 atttgaacaactatttgatacaacttttgtgacaa 49453615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 10384245 - 10384209
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||| ||||||||||||||||||||||    
T  10384245 gttgtcacaaagtagttgtacaaatatcatttctctt 10384209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 39788765 - 39788801
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    |||||| ||||||||||||||||||||||||||||||    
T  39788765 ttgtcaaaaagtaattgtacaaatatcatttctctta 39788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 2362541 - 2362507
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||||||||||||||| |||||||||||    
T  2362541 atttgaacaactatttgatacaatttttgtgacaa 2362507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 35883644 - 35883682
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  35883644 gttgtcaaaaaataattgtacaaatatcatttctcttat 35883682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 50226916 - 50226954
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  50226916 gttgtcacaaagtggttgtacaaatatcatttctcttat 50226954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 224
Target Start/End: Original strand, 50528094 - 50528148
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttatatgaatcataactttt 224  Q
    ||||||||||| | ||||||||||||||||||||| |||  |||| |||||||||    
T  50528094 gttgtcacaaattgattgtacaaatatcatttctcatatgggaatgataactttt 50528148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 6829820 - 6829857
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||||||| || |||||||||||||||||||||||    
T  6829820 gttgtcacaaattagttgtacaaatatcatttctctta 6829857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 204
Target Start/End: Complemental strand, 32938892 - 32938859
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttctc 204  Q
    |||||||||| |||||||||||||||||||||||    
T  32938892 ttgtcacaaattaattgtacaaatatcatttctc 32938859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 37843469 - 37843506
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||| |||||| |||||||||||||||||||||||    
T  37843469 gttgtcaaaaagtagttgtacaaatatcatttctctta 37843506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 18610807 - 18610771
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| || ||||||||||||||||||||||    
T  18610807 gttgtcacaaaatagttgtacaaatatcatttctctt 18610771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 25302680 - 25302716
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  25302680 gttgtcacaaagtggttgtacaaatatcatttctctt 25302716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 41885751 - 41885719
Alignment:
Q  174 tcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||| |||||||||||||||||||||||||    
T  41885751 tcacaaaataattgtacaaatatcatttctctt 41885719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 49453525 - 49453489
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  49453525 gttgtcacaaagtggttgtacaaatatcatttctctt 49453489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 50797825 - 50797789
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| | |||||||||||||||||||||||    
T  50797825 gttgtcacaaaatgattgtacaaatatcatttctctt 50797789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 2117539 - 2117573
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||||||||||    
T  2117539 atttgaacaactatttgatacaacttttgtgacaa 2117573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 125126 - 125090
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||| ||||||||||||||||||||||    
T  125126 gttgtcacaaagtagttgtacaaatatcatttctctt 125090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 170 - 205
Target Start/End: Complemental strand, 4954500 - 4954465
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctct 205  Q
    ||||||||||| ||||||||||||||||||||||||    
T  4954500 gttgtcacaaattaattgtacaaatatcatttctct 4954465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 69
Target Start/End: Complemental strand, 12349957 - 12349926
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtga 69  Q
    ||||||||||||||||||||||||||||||||    
T  12349957 atttgaacaactatttgatacaacttttgtga 12349926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 11306868 - 11306834
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||||||||||||||||||||| |||||    
T  11306868 atttgaacaactatttgatacaacttttgagacaa 11306834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 15918027 - 15918061
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctc 204  Q
    ||||||||||| |||||||||||||||||||||||    
T  15918027 gttgtcacaaattaattgtacaaatatcatttctc 15918061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 39595446 - 39595412
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||| |||||||||||||||||||||||    
T  39595446 atttgaacaaccatttgatacaacttttgtgacaa 39595412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 43482537 - 43482503
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||||||||||||||| |||||||||||    
T  43482537 atttgaacaactatttgatacaatttttgtgacaa 43482503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 23991171 - 23991208
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    |||||||||||||  |||||||||||||||||||||||    
T  23991171 gttgtcacaaagtggttgtacaaatatcatttctctta 23991208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 611898 - 611862
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  611898 gttgtcaaaaagtaattgttcaaatatcatttctctt 611862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 1774320 - 1774356
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||||||  |||||||||||||||||||||    
T  1774320 gttgtcacaaagtagatgtacaaatatcatttctctt 1774356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 14780458 - 14780498
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttatat 210  Q
    ||||||| ||||||  |||||||||||||||||||||||||    
T  14780458 gttgtcaaaaagtagatgtacaaatatcatttctcttatat 14780498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 28811463 - 28811427
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  28811463 gttgtcacaaagtggttgtacaaatatcatttctctt 28811427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 36408103 - 36408137
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||||||||||    
T  36408103 atttgaacaactatttgatacaacttttgtgacaa 36408137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 36413226 - 36413260
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||||||||||    
T  36413226 atttgaacaactatttgatacaacttttgtgacaa 36413260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 41262655 - 41262693
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    ||||||||||| |||||||||||||||||||||||||||    
T  41262655 gttgtcacaaaataattgtacaaatatcatttctcttat 41262693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 42915118 - 42915152
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||||||||||    
T  42915118 atttgaacaactatttgatacaacttttgtgacaa 42915152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 4896537 - 4896577
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttatat 210  Q
    |||||||||||||  ||||||||||||||||||||||||||    
T  4896537 gttgtcacaaagtggttgtacaaatatcatttctcttatat 4896577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 38864773 - 38864809
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| |||||||||||||||||||||||||    
T  38864773 gttgtcacaaaataattgtacaaatatcatttctctt 38864809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 5234370 - 5234404
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||| |||||||||||||||||||||||    
T  5234370 atttgaacaaccatttgatacaacttttgtgacaa 5234404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 19174800 - 19174834
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctc 204  Q
    ||||||||||| |||||||||||||||||||||||    
T  19174800 gttgtcacaaaataattgtacaaatatcatttctc 19174834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 31275318 - 31275284
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||| |||||||||||||||||||||||    
T  31275318 atttgaacaaccatttgatacaacttttgtgacaa 31275284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 46173584 - 46173546
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  46173584 gttgtcacaaagtggttgtacaaatatcatttctcttat 46173546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 51039153 - 51039187
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctc 204  Q
    |||||||||||||| ||||||||||||||||||||    
T  51039153 gttgtcacaaagtagttgtacaaatatcatttctc 51039187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 51389488 - 51389454
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||| |||||||||||||||||||||||    
T  51389488 atttgaacaaccatttgatacaacttttgtgacaa 51389454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 207
Target Start/End: Original strand, 5234501 - 5234534
Alignment:
Q  174 tcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||||| ||||||||||||||||||||||||    
T  5234501 tcacaaagtgattgtacaaatatcatttctctta 5234534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 9162100 - 9162063
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  9162100 gttgtcacaaaatgattgtacaaatatcatttctctta 9162063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 33093141 - 33093178
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||||||| || |||||||||||||||||||||||    
T  33093141 gttgtcacaaaatagttgtacaaatatcatttctctta 33093178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 3223023 - 3222987
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| | |||||||||||||||||||||||    
T  3223023 gttgtcacaaattgattgtacaaatatcatttctctt 3222987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Original strand, 18568473 - 18568509
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    |||||||||| ||||| ||||||||||||||||||||    
T  18568473 ttgtcacaaaataattctacaaatatcatttctctta 18568509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 24235353 - 24235317
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    |||||||||| | ||||||||||||||||||||||||    
T  24235353 ttgtcacaaattgattgtacaaatatcatttctctta 24235317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 31221447 - 31221411
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| | |||||||||||||||||||||||    
T  31221447 gttgtcacaaattgattgtacaaatatcatttctctt 31221411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 44368239 - 44368275
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| | |||||||||||||||||||||||    
T  44368239 gttgtcacaaattgattgtacaaatatcatttctctt 44368275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 51296226 - 51296262
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  51296226 gttgtcataaagtgattgtacaaatatcatttctctt 51296262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 29706075 - 29706041
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||||||||||    
T  29706075 atttgaacaactatttgatacaacttttgtgacaa 29706041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 7231905 - 7231939
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||| |||||||||||||||||||||||    
T  7231905 atttgaacaaccatttgatacaacttttgtgacaa 7231939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 11173622 - 11173588
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||| |||||||||||||||||||||||    
T  11173622 atttgaacaaccatttgatacaacttttgtgacaa 11173588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 46953121 - 46953087
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||| ||||||    
T  46953121 atttgaacaactatttgatacaacttttatgacaa 46953087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 208
Target Start/End: Complemental strand, 108464 - 108427
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    ||||||||||||  ||||||||||||||||||||||||    
T  108464 ttgtcacaaagtggttgtacaaatatcatttctcttat 108427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 1901963 - 1901999
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  1901963 gttgtcacaaagtggttgtacaaatatcatttctctt 1901999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 1911409 - 1911445
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  1911409 gttgtcacaaagtggttgtacaaatatcatttctctt 1911445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 7867748 - 7867784
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| || ||||||||||||||||||||||    
T  7867748 gttgtcacaaaatagttgtacaaatatcatttctctt 7867784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 18169191 - 18169155
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  18169191 gttgtcacaaagtggttgtacaaatatcatttctctt 18169155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 29800590 - 29800622
Alignment:
Q  174 tcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||| ||||||||||||||||||||||    
T  29800590 tcacaaagtagttgtacaaatatcatttctctt 29800622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 38 - 66
Target Start/End: Original strand, 32687858 - 32687886
Alignment:
Q  38 atttgaacaactatttgatacaacttttg 66  Q
    |||||||||||||||||||||||||||||    
T  32687858 atttgaacaactatttgatacaacttttg 32687886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 35272061 - 35272025
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  35272061 gttgtcacaaagtggttgtacaaatatcatttctctt 35272025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 48945881 - 48945845
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  48945881 gttgtcacaaagtggttgtacaaatatcatttctctt 48945845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 52454131 - 52454167
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| | |||||||||||||||||||||||    
T  52454131 gttgtcacaaattgattgtacaaatatcatttctctt 52454167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 11164275 - 11164309
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||||||||||    
T  11164275 atttgaacaactatttgatacaacttttgtgacaa 11164309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 42607557 - 42607594
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    |||||||||| |||||||||||||||||||||||||||    
T  42607557 ttgtcacaaaataattgtacaaatatcatttctcttat 42607594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 3091913 - 3091879
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||| ||||||||||||||||||||||||    
T  3091913 atttgaacaattatttgatacaacttttgtgacaa 3091879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 5067683 - 5067721
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    ||||||||||||||  |||||||||||||||||||||||    
T  5067683 gttgtcacaaagtagatgtacaaatatcatttctcttat 5067721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 12600220 - 12600186
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||| ||||||||||||||||||    
T  12600220 atttgaacaactatttcatacaacttttgtgacaa 12600186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Complemental strand, 21490737 - 21490703
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctc 204  Q
    |||||||||||||| ||||||||||||||||||||    
T  21490737 gttgtcacaaagtagttgtacaaatatcatttctc 21490703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 33296108 - 33296146
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  33296108 gttgtcacaaagtggttgtacaaatatcatttctcttat 33296146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 36133146 - 36133112
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||| ||||||||||||||||||    
T  36133146 atttgaacaactatttcatacaacttttgtgacaa 36133112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 29871389 - 29871426
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  29871389 gttgtcataaactaattgtacaaatatcatttctctta 29871426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 43 - 72
Target Start/End: Complemental strand, 39286020 - 39285991
Alignment:
Q  43 aacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||||||||||||||||||||||    
T  39286020 aacaactatttgatacaacttttgtgacaa 39285991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 4738609 - 4738645
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  4738609 gttgtcacaaagtggttgtacaaatatcatttctctt 4738645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 14140374 - 14140410
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| || ||||||||||||||||||||||    
T  14140374 gttgtcacaaattagttgtacaaatatcatttctctt 14140410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 19695717 - 19695753
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  19695717 gttgtcaaaaagtgattgtacaaatatcatttctctt 19695753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 23391102 - 23391070
Alignment:
Q  174 tcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||| |||||||||||||||||||||||||    
T  23391102 tcacaaattaattgtacaaatatcatttctctt 23391070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 27307268 - 27307304
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| | |||||||||||||||||||||||    
T  27307268 gttgtcacaaattgattgtacaaatatcatttctctt 27307304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 42283276 - 42283312
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  42283276 gttgtcacaaagtggttgtacaaatatcatttctctt 42283312  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 40413375 - 40413411
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| |||||||||||||||||||||||||    
T  40413375 gttgtcacaaaataattgtacaaatatcatttctctt 40413411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 171 - 206
Target Start/End: Complemental strand, 6004977 - 6004942
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||||| ||||||||||||||||||||||    
T  6004977 ttgtcacaaagtagttgtacaaatatcatttctctt 6004942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 204
Target Start/End: Original strand, 7596928 - 7596962
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctc 204  Q
    ||||||||||||| |||||||||||||||||||||    
T  7596928 gttgtcacaaagtgattgtacaaatatcatttctc 7596962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 7678904 - 7678870
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||||| ||||    
T  7678904 atttgaacaactatttgatacaacttttgtaacaa 7678870  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 21273609 - 21273643
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||| ||||||||||||||||||    
T  21273609 atttgaacaactatttcatacaacttttgtgacaa 21273643  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 9046970 - 9047003
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgaca 71  Q
    ||||||||||||||||||||||| ||||||||||    
T  9046970 atttgaacaactatttgatacaatttttgtgaca 9047003  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 22852876 - 22852913
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    |||||||||||||  |||||||||||||||||||||||    
T  22852876 gttgtcacaaagtggttgtacaaatatcatttctctta 22852913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 36497695 - 36497658
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||||||| || |||||||||||||||||||||||    
T  36497695 gttgtcacaaaatagttgtacaaatatcatttctctta 36497658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 71
Target Start/End: Original strand, 44672132 - 44672165
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgaca 71  Q
    |||||||||| |||||||||||||||||||||||    
T  44672132 atttgaacaattatttgatacaacttttgtgaca 44672165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Original strand, 69632 - 69664
Alignment:
Q  174 tcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||| |||||||||||||||||||||||    
T  69632 tcacaaagtgattgtacaaatatcatttctctt 69664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 23952524 - 23952492
Alignment:
Q  174 tcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||| |||||||||||||||||||||||||    
T  23952524 tcacaaaataattgtacaaatatcatttctctt 23952492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 28927715 - 28927679
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  28927715 gttgtcacaaagtggttgtacaaatatcatttctctt 28927679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 45101430 - 45101394
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  45101430 gttgtcacaaagtggttgtacaaatatcatttctctt 45101394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 208
Target Start/End: Complemental strand, 27778111 - 27778075
Alignment:
Q  172 tgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    |||||||||||| ||||||||||||||||||||||||    
T  27778111 tgtcacaaagtagttgtacaaatatcatttctcttat 27778075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 6353901 - 6353867
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||| |||||||||||||||||||||||||||    
T  6353901 atttgaaaaactatttgatacaacttttgtgacaa 6353867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 8792499 - 8792533
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||| |||||||||||||||||||||||    
T  8792499 atttgaacaaccatttgatacaacttttgtgacaa 8792533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 12142056 - 12142022
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||| |||||||||||||||||||||||    
T  12142056 atttgaacaaccatttgatacaacttttgtgacaa 12142022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 170 - 208
Target Start/End: Original strand, 22330657 - 22330695
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctcttat 208  Q
    |||||||||||||  ||||||||||||||||||||||||    
T  22330657 gttgtcacaaagtggttgtacaaatatcatttctcttat 22330695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 32428240 - 32428206
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||| ||||||    
T  32428240 atttgaacaactatttgatacaacttttatgacaa 32428206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 32933719 - 32933685
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||| ||||||||||||||||||||||||    
T  32933719 atttgaacaattatttgatacaacttttgtgacaa 32933685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 203
Target Start/End: Original strand, 24044773 - 24044806
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttct 203  Q
    ||||||||||| ||||||||||||||||||||||    
T  24044773 gttgtcacaaaataattgtacaaatatcatttct 24044806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Complemental strand, 41227101 - 41227064
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||||||| |||||||| |||||||||||||||||    
T  41227101 gttgtcacaaaataattgtataaatatcatttctctta 41227064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 207
Target Start/End: Original strand, 41985126 - 41985163
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  41985126 gttgtcacaaattgattgtacaaatatcatttctctta 41985163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 2469737 - 2469701
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  2469737 gttgtcacaaagtggttgtacaaatatcatttctctt 2469701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 37352016 - 37352052
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  37352016 gttgtcacaaagtggttgtacaaatatcatttctctt 37352052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 207
Target Start/End: Complemental strand, 41966365 - 41966329
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttctctta 207  Q
    ||||||||||||  |||||||||||||||||||||||    
T  41966365 ttgtcacaaagtggttgtacaaatatcatttctctta 41966329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 12441572 - 12441536
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||| ||||||||||||||||||||||    
T  12441572 gttgtcacaaagtagttgtacaaatatcatttctctt 12441536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 174 - 205
Target Start/End: Complemental strand, 10521156 - 10521125
Alignment:
Q  174 tcacaaagtaattgtacaaatatcatttctct 205  Q
    ||||||||||||||||||||||||||||||||    
T  10521156 tcacaaagtaattgtacaaatatcatttctct 10521125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 32253953 - 32253919
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||||||||| |||||||||||||||||    
T  32253953 atttgaacaactatttggtacaacttttgtgacaa 32253919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 32853043 - 32853077
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||||||||||||||| |||||||||||    
T  32853043 atttgaacaactatttgatacaatttttgtgacaa 32853077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 1196092 - 1196056
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||| ||||| |||||||||||||||||||||||    
T  1196092 gttgtcaaaaagtgattgtacaaatatcatttctctt 1196056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 171 - 203
Target Start/End: Complemental strand, 12501507 - 12501475
Alignment:
Q  171 ttgtcacaaagtaattgtacaaatatcatttct 203  Q
    |||||||||| ||||||||||||||||||||||    
T  12501507 ttgtcacaaaataattgtacaaatatcatttct 12501475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 15722540 - 15722576
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| | |||||||||||||||||||||||    
T  15722540 gttgtcacaaaatgattgtacaaatatcatttctctt 15722576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 27334892 - 27334856
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| || ||||||||||||||||||||||    
T  27334892 gttgtcacaaaatagttgtacaaatatcatttctctt 27334856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 27395632 - 27395596
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    ||||||||||| || ||||||||||||||||||||||    
T  27395632 gttgtcacaaaatagttgtacaaatatcatttctctt 27395596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Original strand, 15088 - 15122
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    ||||||||||||||||| |||||||||||||||||    
T  15088 atttgaacaactatttggtacaacttttgtgacaa 15122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 38 - 72
Target Start/End: Complemental strand, 18175 - 18141
Alignment:
Q  38 atttgaacaactatttgatacaacttttgtgacaa 72  Q
    |||||||||||||||||||||||||||| ||||||    
T  18175 atttgaacaactatttgatacaacttttatgacaa 18141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 174 - 206
Target Start/End: Complemental strand, 36032 - 36000
Alignment:
Q  174 tcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||| ||||||||||||||||||||||    
T  36032 tcacaaagtagttgtacaaatatcatttctctt 36000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 170 - 206
Target Start/End: Original strand, 219701 - 219737
Alignment:
Q  170 gttgtcacaaagtaattgtacaaatatcatttctctt 206  Q
    |||||||||||||  ||||||||||||||||||||||    
T  219701 gttgtcacaaagtggttgtacaaatatcatttctctt 219737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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