View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15000_low_9 (Length: 381)

Name: NF15000_low_9
Description: NF15000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15000_low_9
NF15000_low_9
[»] chr5 (6 HSPs)
chr5 (111-365)||(40283610-40283864)
chr5 (111-365)||(40326538-40326792)
chr5 (111-364)||(40311258-40311511)
chr5 (111-266)||(40256777-40256932)
chr5 (111-174)||(40406502-40406565)
chr5 (111-174)||(40409211-40409274)


Alignment Details
Target: chr5 (Bit Score: 255; Significance: 1e-142; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 111 - 365
Target Start/End: Original strand, 40283610 - 40283864
Alignment:
Q  111 atcaaggatttcaattgttgttttttctgaaaactttgcagattctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaac 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283610 atcaaggatttcaattgttgttttttctgaaaactttgcagattctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaac 40283709  T
Q  211 caaaaggttttgccaatcttttacaaaatagaaccgtccgatgtaaggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttg 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283710 caaaaggttttgccaatcttttacaaaatagaaccgtccgatgtaaggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttg 40283809  T
Q  311 gaaatgactctgagaaggtaaaggaatggaggtcagctttatctgaagttgctaa 365  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40283810 gaaatgactctgagaaggtaaaggaatggaggtcagctttatctgaagttgctaa 40283864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 111 - 365
Target Start/End: Original strand, 40326538 - 40326792
Alignment:
Q  111 atcaaggatttcaattgttgttttttctgaaaactttgcagattctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaac 210  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||  ||| |||||||    
T  40326538 atcaaggatttcaattgttgttttctctgaaaactttgcagattctccctggtgtctagatgaattggtcactatgctaaagtgcaaggagaggaagaac 40326637  T
Q  211 caaaaggttttgccaatcttttacaaaatagaaccgtccgatgtaaggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttg 310  Q
    ||| || |||||||||||||||||||||||||||| ||    ||||| ||||||| ||| || |||  || ||||||| |||||||| || |||||||||    
T  40326638 caacagattttgccaatcttttacaaaatagaaccatcttgggtaagacatcagagaaatagttatggaaaagccatgactaagcatgaagaagagtttg 40326737  T
Q  311 gaaatgactctgagaaggtaaaggaatggaggtcagctttatctgaagttgctaa 365  Q
    ||||||||||||| ||||| ||  |||||||||||||||||| ||||||||||||    
T  40326738 gaaatgactctgaaaaggtgaataaatggaggtcagctttatgtgaagttgctaa 40326792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 111 - 364
Target Start/End: Original strand, 40311258 - 40311511
Alignment:
Q  111 atcaaggatttcaattgttgttttttctgaaaactttgcagattctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaac 210  Q
    ||||||||||||| || ||||||| ||| ||||  ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40311258 atcaaggatttcagttattgttttctctaaaaaaattgcacattcttcttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaac 40311357  T
Q  211 caaaaggttttgccaatcttttacaaaatagaaccgtccgatgtaaggcatcagaaaaacagctataaaagagccatggctaagcataaaaaagagtttg 310  Q
    ||| || ||||||| || ||||| |||||||||||||||||||||||||||||||||||||| ||| ||||||  |||||||| ||   ||||  |||||    
T  40311358 caacagattttgccgattttttataaaatagaaccgtccgatgtaaggcatcagaaaaacagttatgaaagaggaatggctaaacaagtaaaaaggtttg 40311457  T
Q  311 gaaatgactctgagaaggtaaaggaatggaggtcagctttatctgaagttgcta 364  Q
    | ||||||| ||||||| || ||  ||||||||||||||||  |||||||||||    
T  40311458 gtaatgactttgagaagttacagatatggaggtcagctttacttgaagttgcta 40311511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 266
Target Start/End: Complemental strand, 40256932 - 40256777
Alignment:
Q  111 atcaaggatttcaattgttgttttttctgaaaactttgcagattctccttggtgtctagatgaattggtcactattcttaagtgtaaaaagatgaagaac 210  Q
    ||||||| |||| ||| ||||||| || |||||||||||| ||||  | |||||||| |||||| | || |  |||||| ||||||  || ||||||||     
T  40256932 atcaaggctttccattattgttttatccgaaaactttgcatattcatcatggtgtctcgatgaacttgttaagattcttgagtgtatgaaaatgaagaat 40256833  T
Q  211 caaaaggttttgccaatcttttacaaaatagaaccgtccgatgtaaggcatcagaa 266  Q
    |||   |||| |||||| ||||||||| | || || || ||||||||| |||||||    
T  40256832 caattagtttggccaattttttacaaagtggagccatcagatgtaaggtatcagaa 40256777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 40406502 - 40406565
Alignment:
Q  111 atcaaggatttcaattgttgttttttctgaaaactttgcagattctccttggtgtctagatgaa 174  Q
    ||||||| |||||||||||||||| ||||||||||||| | ||||  | |||||||| ||||||    
T  40406502 atcaaggctttcaattgttgttttgtctgaaaactttggatattccacgtggtgtcttgatgaa 40406565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 174
Target Start/End: Original strand, 40409211 - 40409274
Alignment:
Q  111 atcaaggatttcaattgttgttttttctgaaaactttgcagattctccttggtgtctagatgaa 174  Q
    ||||||| |||||||||||||||| ||||||||||||| | ||||  | |||||||| ||||||    
T  40409211 atcaaggctttcaattgttgttttgtctgaaaactttggatattccacatggtgtcttgatgaa 40409274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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