View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15001_high_1 (Length: 505)
Name: NF15001_high_1
Description: NF15001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15001_high_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 416; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 14 - 486
Target Start/End: Complemental strand, 35354931 - 35354459
Alignment:
| Q |
14 |
ccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtcaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35354931 |
ccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtcaa |
35354832 |
T |
|
| Q |
114 |
aatacataagaaagttgtgttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagnnnnnnngttcatacaagtgataggct |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
35354831 |
aatacataagaaagttgtgttattttgacaccaaaatttggacactcacaaatcaagcatgcaaaaatgaaagaaaaaaagttcatacaagtgataggct |
35354732 |
T |
|
| Q |
214 |
cagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35354731 |
cagtaacaattgaagaatggtgatgagagtgataacgagagtatagataatgatgatgaagtgctctatgaagccaatagtataaaaactccactggtcc |
35354632 |
T |
|
| Q |
314 |
agcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatcctatataatatactagtgca |
413 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |
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| T |
35354631 |
agcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatcctatataatatactagtgca |
35354532 |
T |
|
| Q |
414 |
gtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaacatagattaatgtttaatagaaa |
486 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
35354531 |
gtgaacaatatttgatcatccctgcaaatgccaaacagtcaaaatcttaacatagattaatgtttaatagaaa |
35354459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 160 - 442
Target Start/End: Complemental strand, 35379289 - 35379007
Alignment:
| Q |
160 |
cacaaatcaagcatgcaaaaatgaaagnnnnnnngttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatag |
259 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| |
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|
| T |
35379289 |
cacaaatcaagcatgcaaaaatgaaagaaaaaaagttcatacaagtgataggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatag |
35379190 |
T |
|
| Q |
260 |
ataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccat |
359 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |
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|
| T |
35379189 |
ataatgatgatgaagtgctctatgaagccaatagtataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccat |
35379090 |
T |
|
| Q |
360 |
ggtaaattagaggctataggaaatatcatgtatcctatataatatactagtgcagtgaacaatatttgatcatccctgcaaat |
442 |
Q |
| |
|
||||| ||||| || ||||||||||| | |||| ||||| ||||||| ||| |||||||||| |||||||||||||||||||| |
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|
| T |
35379089 |
ggtaagttagaagccataggaaatataaagtatgctatacaatatacgagtacagtgaacaacatttgatcatccctgcaaat |
35379007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 178; E-Value: 9e-96
Query Start/End: Original strand, 194 - 443
Target Start/End: Complemental strand, 35369896 - 35369647
Alignment:
| Q |
194 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
293 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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|
| T |
35369896 |
gttcatacaagtgacaggctcagtgacaattgaagaatgatggtgagaatgataacgagagtatagataatgatgatgaagtgctctatgaagccaatag |
35369797 |
T |
|
| Q |
294 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
393 |
Q |
| |
|
||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| ||||| || ||||||||||||||||||| |
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|
| T |
35369796 |
tataaaaactcgactggtccagcatgcaatattgctgtaagaatcacaccatctattctccaccatggtaagttagaagccataggaaatatcatgtatc |
35369697 |
T |
|
| Q |
394 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatg |
443 |
Q |
| |
|
|||| || |||| |||||||||||||| ||||| ||||||||||||||| |
|
|
| T |
35369696 |
ctatgtagtataacagtgcagtgaacaaaatttggtcatccctgcaaatg |
35369647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 35370375 - 35370278
Alignment:
| Q |
14 |
ccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtc |
111 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
35370375 |
ccacagatgattttttgatgaacaatgttgttaacattggtatagcaaaaagtgtaaaatatgacaaatgctcggcaaatgggtgtgccacagctgtc |
35370278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 35380937 - 35380837
Alignment:
| Q |
14 |
ccacagaagattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtcaa |
113 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
35380937 |
ccacggaagatttattgatgaacaatgttgtcaacattgggatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgcgacagctgtcaa |
35380838 |
T |
|
| Q |
114 |
a |
114 |
Q |
| |
|
| |
|
|
| T |
35380837 |
a |
35380837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 158; Significance: 7e-84; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 194 - 463
Target Start/End: Complemental strand, 19684317 - 19684048
Alignment:
| Q |
194 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
293 |
Q |
| |
|
|||||||| ||||||||| ||||| |||||||||||||| || |||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19684317 |
gttcataccagtgataggttcagtgacaattgaagaatgatggtgagaatggtaacgagaatatagataatgatgatgaagtgctctatgtagccaatag |
19684218 |
T |
|
| Q |
294 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
393 |
Q |
| |
|
||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| || | || |||||||||||| |||| |
|
|
| T |
19684217 |
tataagaactccactggtccagcatgcaagatagctgtaagaatcacaccatctgttctccaccatggtaagttggcagccataggaaatatcgtgtaaa |
19684118 |
T |
|
| Q |
394 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
463 |
Q |
| |
|
||||||| | | || |||||||||||||||||||||||||||||||||| |||||| | |||||||||| |
|
|
| T |
19684117 |
gtatataaaacattaatgcagtgaacaatatttgatcatccctgcaaatgtcacacaatgaaaatcttaa |
19684048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 194 - 463
Target Start/End: Original strand, 19630480 - 19630749
Alignment:
| Q |
194 |
gttcatacaagtgataggctcagtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatag |
293 |
Q |
| |
|
||||||||||||||||||||| || |||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
19630480 |
gttcatacaagtgataggctcggtgacaattgaagaatgatgatgagaatggtaacgagagtatagataatgatgatgaagtgctctatgtagccaatag |
19630579 |
T |
|
| Q |
294 |
tataaaaactccactggtccagcatgcaatattactgtaagaatcacaccatctgttctccaccatggtaaattagaggctataggaaatatcatgtatc |
393 |
Q |
| |
|
||||| ||||||||||||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||| || ||||||||||| ||||| |
|
|
| T |
19630580 |
tataagaactccactggtccagcatgcaagagagctgtaagaaccacaccatctgttctccaccatggtaagttagcagccataggaaatattgtgtata |
19630679 |
T |
|
| Q |
394 |
ctatataatatactagtgcagtgaacaatatttgatcatccctgcaaatgccacacagtcaaaatcttaa |
463 |
Q |
| |
|
|||||| | ||||||||| ||||||||||||||||||||||||||| |||| | | |||||||||| |
|
|
| T |
19630680 |
gtatatagaaggttagtgcagtcaacaatatttgatcatccctgcaaatgtcacataatgaaaatcttaa |
19630749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 19684573 - 19684483
Alignment:
| Q |
22 |
gattttttgatgaacaatgttgtcaacattggtatagcaaaaagtgtaaaatatgacaaatgctccgcaaatgggtgtgtcacagctgtca |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| ||| ||| |||||||| |||||||| ||||||| |
|
|
| T |
19684573 |
gattttttcatgaacaatgttgtcaacattggtataagaaaaagtgtgaaatatgccaacatctcagcaaatggatgtgtcaccgctgtca |
19684483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 216 - 314
Target Start/End: Original strand, 2258460 - 2258558
Alignment:
| Q |
216 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtcca |
314 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| ||||||||| | |||||||||||||||| |
|
|
| T |
2258460 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaatagtaaagaaactccactggtcca |
2258558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 216 - 319
Target Start/End: Original strand, 2280450 - 2280553
Alignment:
| Q |
216 |
gtaacaattgaagaatggtgatgagaatgataacgagagtatagataatggtgatgaagtgctctatgtagccaatagtataaaaactccactggtccag |
315 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| | ||| || || |||| |||||||||||||| |||| |||||| || | ||| || |||| ||||| |
|
|
| T |
2280450 |
gtaacaatggaagaatgatgatgagaatgatatctagaatagaggaaatgatgatgaagtgctctgtgtaaccaataataaagaaattcaactgctccag |
2280549 |
T |
|
| Q |
316 |
catg |
319 |
Q |
| |
|
|||| |
|
|
| T |
2280550 |
catg |
2280553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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