View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15001_low_2 (Length: 497)
Name: NF15001_low_2
Description: NF15001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15001_low_2 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 497
Target Start/End: Original strand, 39241816 - 39242290
Alignment:
| Q |
17 |
gagatggtttgaagatatgcaaggttgttgatagggcagagtttgaggaagtgaacaagcaggcgtttggaaaatgtgaaagccatatcatccagtgttt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||| |
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| T |
39241816 |
gagatggtttgaagatatgcaaggttgttgatagggcagagtttgaggaagtgaacaagcaggtgtttggaaaatgtgaaagccttatcatccagtgttt |
39241915 |
T |
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| Q |
117 |
acatgatgcaaaggtaaaagttaaggatgtaaatgatgtgataattgttgatggatgttcttatatcccaagggtgaggaatcttgttaccaagatatgc |
216 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39241916 |
acatgatgcaaaggtaaaagttgaggatgtaaatgatgtgataattgttgatggatgttcttatatcccaagggtgaggaatcttgttaccaagatatgc |
39242015 |
T |
|
| Q |
217 |
gaagtaacagaagtttataaaggtataataaatcctttggaaggtgcagtttgtggtgcagcaatagaaggagctgctgctttaggcatcattgatccat |
316 |
Q |
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| T |
39242016 |
gaagtaacagaagtttataaaggtataataaatcctttggaaggtgcagtttgtggtgcagcaatagaaggagctgttgctttaggcatcattgatccat |
39242115 |
T |
|
| Q |
317 |
ttggaaacttggacttattaaccattcaagccacaccgcatgccattggaattcgagctgatggaaacaagtttgtcccagtgattccaaggaacactag |
416 |
Q |
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| T |
39242116 |
ttggaaacttggacttattaaccattcaagccacaccgcatgccattggaattcgagctgatggaaacaagtttgtcccagtgattccaaggaacactag |
39242215 |
T |
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| Q |
417 |
aattcccgcgcgcaaggatctacttatcacgactatttatgattatgataatcaaactgcaacattgatacttgtctacga |
497 |
Q |
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| T |
39242216 |
aattcccgcgcgcaaggatctacttttcacaactat------ttatgataatcaaactgcaacattgatacttgtctacga |
39242290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 23 - 459
Target Start/End: Original strand, 808174 - 808609
Alignment:
| Q |
23 |
gtttgaagatatgcaaggttgttgatagggcagagtttgaggaagtgaacaagcaggcgtttggaaaatgtgaaagccatatcatccagtgtttacatga |
122 |
Q |
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||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||| ||| | ||| |||||||||| ||||||||| ||||||||||| |
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| T |
808174 |
gtttgaagatatgcaaggttgttgacagggcggagtttgaggaggtgaacaaagaggtgttcgaaaagtgtgaaagccttatcatccaatgtttacatga |
808273 |
T |
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| Q |
123 |
tgcaaaggtaaaagttaaggatgtaaatgatgtgataattgttgatggatgttcttatatccca--agggtgaggaatcttgttaccaagatatgcgaag |
220 |
Q |
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| T |
808274 |
tgcaaaggtagaagtcggggatataaatgatgtgatacttgttggtggatgttcatatatcccacaagggtggagaatcttgttaccaacttatgcaaaa |
808373 |
T |
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| Q |
221 |
taacagaagtttataaaggtataataaatcctttggaaggtgcagtttgtggtgcagcaatagaaggagctgctgctttaggcatcattgatccatttgg |
320 |
Q |
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| T |
808374 |
ttacagaagtttataaaggtataa---accctttggaaggtgcggtttgtggtgcagcaatggaaggagctgttgcttcaggcatcagtgatccttttgg |
808470 |
T |
|
| Q |
321 |
aaacttggacttattaaccattcaagccacaccgcatgccattggaattcgagctgatggaaacaagtttgtcccagtgattccaaggaacactagaatt |
420 |
Q |
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|||||||||||| ||||| ||||||||||| || | |||||||||||| ||||||||||| ||||||||||| || || ||||| |||||||| | ||| |
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| T |
808471 |
aaacttggacttgttaacgattcaagccactcctcttgccattggaatccgagctgatgggaacaagtttgtacctgtaattccgaggaacaccacaatg |
808570 |
T |
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| Q |
421 |
cccgcgcgcaaggatctacttatcacgactatttatgat |
459 |
Q |
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| T |
808571 |
ccagcgcgtaaggatctacttttcacaactattcatgat |
808609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 278
Target Start/End: Original strand, 47843031 - 47843289
Alignment:
| Q |
17 |
gagatggtttgaagatatgcaaggttgttgatagggcagagtttgaggaagtgaacaagcaggcgtttggaaaatgtgaaagccatatcatccagtgttt |
116 |
Q |
| |
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||||||||||||| ||||| |||||||| | |||| ||||||||||| || || || ||| ||||| ||| |||||||| | |||||||| | || |
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| T |
47843031 |
gagatggtttgaaaatatgtaaggttgtaaagagggaggagtttgaggatgtaaataaagaggtgtttgaaaagtgtgaaaggctgatcatccaaagctt |
47843130 |
T |
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| Q |
117 |
acatgatgcaaaggtaaaagttaaggatgtaaatgatgtgataattgttgatggatgttcttatatcccaagggtgaggaatcttgttaccaagatatgc |
216 |
Q |
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| T |
47843131 |
gcaagatgcagatataaaagttgatgatataaatgatgtgataattgttggtggatgttggaatataccgaaggtgaaggatcttgttactaaaatatgc |
47843230 |
T |
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| Q |
217 |
gaagtaacagaagtttataaaggtataataaatcctttggaaggtgcagtttgtggtgcagc |
278 |
Q |
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||| || ||| |||||||||| ||| || |||||||||| |||| ||||||||||||| |
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| T |
47843231 |
aaaggaaaggaactttataaagg---aatgaaccctttggaagctgcactttgtggtgcagc |
47843289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 103 - 223
Target Start/End: Complemental strand, 47845308 - 47845189
Alignment:
| Q |
103 |
atcatccagtgtttacatgatgcaaaggtaaaagttaaggatgtaaatgatgtgataattgttgatggatgttcttatatcccaagggtgaggaatcttg |
202 |
Q |
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|||||||| || || |||||||||||||| || |||| || ||||||||||||||||||| | |||||||| | |||| |||| ||||| |||||||| |
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| T |
47845308 |
atcatccaatgcttgcatgatgcaaaggtggaaactaagaatataaatgatgtgataattgtaggtggatgttgtaatataccaa-ggtgaagaatcttg |
47845210 |
T |
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| Q |
203 |
ttaccaagatatgcgaagtaa |
223 |
Q |
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|||| || |||||| |||||| |
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| T |
47845209 |
ttactaaaatatgcaaagtaa |
47845189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 44727860 - 44727699
Alignment:
| Q |
55 |
gagtttgaggaagtgaacaagcaggcgtttggaaaatgtgaaagccatatcatccagtgtttacatgatgcaaaggtaaaagttaaggatgtaaatgatg |
154 |
Q |
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|||||||||||||| ||||| ||| ||||| ||| ||||||| | |||||||| || |||| ||||||||| || ||||| || || |||| |||| |
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| T |
44727860 |
gagtttgaggaagtaaacaaagaggtgtttgaaaattgtgaaaagctaatcatccaatgcatacaagatgcaaagatagaagttgagaatataaacgatg |
44727761 |
T |
|
| Q |
155 |
tgataattgttgatggatgttcttatatcccaagggtgaggaatcttgttaccaagatatgc |
216 |
Q |
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| T |
44727760 |
tgataattgtaggtggatgttgtaatataccaagggtagagagtcttgttactaaaatatgc |
44727699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 357 - 413
Target Start/End: Complemental strand, 44727570 - 44727514
Alignment:
| Q |
357 |
tgccattggaattcgagctgatggaaacaagtttgtcccagtgattccaaggaacac |
413 |
Q |
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|||||| ||||||||||||||||||||||| ||||| ||| | |||||||||||||| |
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| T |
44727570 |
tgccatcggaattcgagctgatggaaacaaatttgtaccaattattccaaggaacac |
44727514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 47879417 - 47879347
Alignment:
| Q |
146 |
taaatgatgtgataattgttgatggatgttcttatatcccaagggtgaggaatcttgttaccaagatatgc |
216 |
Q |
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|||||||||| |||||||||| |||||||| |||| |||||||||| |||||||||||| || |||||| |
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| T |
47879417 |
taaatgatgttataattgttggtggatgttggaatataccaagggtgaagaatcttgttactaaaatatgc |
47879347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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