View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15001_low_4 (Length: 431)

Name: NF15001_low_4
Description: NF15001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15001_low_4
NF15001_low_4
[»] chr2 (9 HSPs)
chr2 (18-143)||(16567278-16567403)
chr2 (292-420)||(16567006-16567134)
chr2 (296-386)||(18666048-18666138)
chr2 (296-380)||(7671125-7671209)
chr2 (177-213)||(16567213-16567249)
chr2 (312-360)||(15286814-15286862)
chr2 (319-357)||(6458287-6458325)
chr2 (308-361)||(37485879-37485932)
chr2 (315-363)||(15262225-15262273)
[»] chr8 (6 HSPs)
chr8 (18-143)||(7548310-7548438)
chr8 (293-420)||(7548746-7548873)
chr8 (304-366)||(40953531-40953593)
chr8 (304-366)||(3174219-3174281)
chr8 (304-366)||(43597134-43597196)
chr8 (339-416)||(38503636-38503713)
[»] chr7 (5 HSPs)
chr7 (18-143)||(10026892-10027020)
chr7 (293-420)||(10027164-10027291)
chr7 (183-213)||(10027054-10027084)
chr7 (319-420)||(23318281-23318382)
chr7 (303-380)||(39645684-39645761)
[»] chr1 (5 HSPs)
chr1 (293-380)||(45791956-45792043)
chr1 (293-357)||(50004261-50004325)
chr1 (293-357)||(4952092-4952156)
chr1 (315-356)||(17746615-17746656)
chr1 (304-366)||(37346156-37346218)
[»] chr5 (3 HSPs)
chr5 (296-366)||(13040349-13040419)
chr5 (296-366)||(13110342-13110412)
chr5 (320-365)||(39466643-39466688)
[»] chr3 (2 HSPs)
chr3 (301-420)||(44762377-44762496)
chr3 (304-366)||(40700824-40700886)
[»] chr4 (4 HSPs)
chr4 (296-361)||(24155789-24155854)
chr4 (304-404)||(37910424-37910524)
chr4 (304-366)||(45498972-45499034)
chr4 (319-357)||(2183997-2184035)
[»] chr6 (1 HSPs)
chr6 (304-366)||(12255414-12255476)


Alignment Details
Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 16567403 - 16567278
Alignment:
Q  18 atttcaaccataacaaacttatttcaaccttgactatggaagaagaaggttaagaaatggatttcagccatcgtaattttatttcttctaaaccaatttc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  16567403 atttcaaccataacaaacttatttcaaccttgactatggaagaagaaggttaacaaatggatttcagccatcgtaattttatttcttctaaaccaatttc 16567304  T
Q  118 attgctatccttcaccaatttccaac 143  Q
    ||||||||||||||||||||||||||    
T  16567303 attgctatccttcaccaatttccaac 16567278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 292 - 420
Target Start/End: Complemental strand, 16567134 - 16567006
Alignment:
Q  292 gttatgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttcctaacattaaccag 391  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||  |||    
T  16567134 gttatgatttatatgatattatgtttgttatcatgtgtgcatcaaacatgtgatatgataaatgtttatcctatcaacatcatttcctatcattattcag 16567035  T
Q  392 ttctatatcatatactatctatatcctat 420  Q
    ||||||||||||| |||||||||||||||    
T  16567034 ttctatatcatatcctatctatatcctat 16567006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 296 - 386
Target Start/End: Original strand, 18666048 - 18666138
Alignment:
Q  296 tgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttcctaacatta 386  Q
    |||| |||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| | ||||||||||| |||||    
T  18666048 tgatatatatgatattatgtttgttatcatgtgtgcatcaaacatgtgataggataaatgtttatcctgtctatatcatttcctatcatta 18666138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 296 - 380
Target Start/End: Original strand, 7671125 - 7671209
Alignment:
Q  296 tgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttccta 380  Q
    |||| |||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||| |||| | ||| |||||||    
T  7671125 tgatatatatgatattatgtttgttataatgtgtacaacaaacatgtgataggataaatgtttatcatgtctatatcctttccta 7671209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 177 - 213
Target Start/End: Complemental strand, 16567249 - 16567213
Alignment:
Q  177 agaaggaggttaacaattatgtttgataactttgcag 213  Q
    |||||||||||||||||||||||||||||||||||||    
T  16567249 agaaggaggttaacaattatgtttgataactttgcag 16567213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 312 - 360
Target Start/End: Complemental strand, 15286862 - 15286814
Alignment:
Q  312 atgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttat 360  Q
    ||||||||||| ||||||||| |||||| ||||||||||| ||||||||    
T  15286862 atgtttgttattatgtgtgcatcaaacacgtgatatgatacatgtttat 15286814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 6458287 - 6458325
Alignment:
Q  319 ttatcatgtgtgcaacaaacatgtgatatgataaatgtt 357  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  6458287 ttatcatgtgtgcaccaaacatgtgataggataaatgtt 6458325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 37485879 - 37485932
Alignment:
Q  308 tattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatc 361  Q
    |||||||||||||||||||||  || ||||||  ||||||||| ||||||||||    
T  37485879 tattatgtttgttatcatgtgcacatcaaacacatgatatgattaatgtttatc 37485932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 15262273 - 15262225
Alignment:
Q  315 tttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcct 363  Q
    |||||||||||||||||| ||||||  ||||  ||||||||||||||||    
T  15262273 tttgttatcatgtgtgcatcaaacacatgatgagataaatgtttatcct 15262225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 7548310 - 7548438
Alignment:
Q  18 atttcaaccataacaaacttatttcaaccttgactatggaag---aagaaggttaagaaatggatttcagccatcgtaattttatttcttctaaaccaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||   |||||||||||  || |||||||||||||||| ||||||||||||||||||||||    
T  7548310 atttcaaccataacaaacttatttcaaccttgactatggaagaagaagaaggttaaccaacggatttcagccatcgtgattttatttcttctaaaccaat 7548409  T
Q  115 ttcattgctatccttcaccaatttccaac 143  Q
    |||||||||||||||||||||||||||||    
T  7548410 ttcattgctatccttcaccaatttccaac 7548438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 420
Target Start/End: Original strand, 7548746 - 7548873
Alignment:
Q  293 ttatgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttcctaacattaaccagt 392  Q
    |||| ||| |||||||||||||| || ||||||||||||| ||||||||||||||||||||||||||||||||| | ||  ||||||| |||||  ||||    
T  7548746 ttattattgatatgatattatgtctgctatcatgtgtgcatcaaacatgtgatatgataaatgtttatcctgtctatattctttcctatcattattcagt 7548845  T
Q  393 tctatatcatatactatctatatcctat 420  Q
    |||||||||||| |||||| ||||||||    
T  7548846 tctatatcatatcctatctctatcctat 7548873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 40953531 - 40953593
Alignment:
Q  304 atgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    ||||||| ||||||||||||||||| ||| ||||||  ||||||||| |||||||||| ||||    
T  40953531 atgatatcatgtttgttatcatgtgcgcatcaaacacatgatatgattaatgtttatcatgtc 40953593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 3174219 - 3174281
Alignment:
Q  304 atgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    ||||||||||||||||||||||||  ||| ||||||  ||||| ||| |||||||||| ||||    
T  3174219 atgatattatgtttgttatcatgtacgcatcaaacacatgataggattaatgtttatcatgtc 3174281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 43597134 - 43597196
Alignment:
Q  304 atgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    |||||||||| ||||||||||||||  || ||||||| ||||| ||| |||||||||| ||||    
T  43597134 atgatattatatttgttatcatgtgcccatcaaacatatgataggattaatgtttatcatgtc 43597196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 339 - 416
Target Start/End: Complemental strand, 38503713 - 38503636
Alignment:
Q  339 atgtgatatgataaatgtttatcctgtcaacatcatttcctaacattaaccagttctatatcatatactatctatatc 416  Q
    |||||||| |||||||||||||| |||| | ||||||||||| | ||| | ||||  ||||||||| |||| ||||||    
T  38503713 atgtgataggataaatgtttatcatgtctatatcatttcctatccttatctagtttcatatcatatcctatttatatc 38503636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 10026892 - 10027020
Alignment:
Q  18 atttcaaccataacaaacttatttcaaccttgactatggaag---aagaaggttaagaaatggatttcagccatcgtaattttatttcttctaaaccaat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||| |||||||||| | ||| ||||||||||||||||||||||    
T  10026892 atttcaaccataacaaacttatttcaaccttgactatggaagaagaagaaggttaacaaacggatttcagctaccgtgattttatttcttctaaaccaat 10026991  T
Q  115 ttcattgctatccttcaccaatttccaac 143  Q
    |||||||||||||||||||||||||||||    
T  10026992 ttcattgctatccttcaccaatttccaac 10027020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 293 - 420
Target Start/End: Original strand, 10027164 - 10027291
Alignment:
Q  293 ttatgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttcctaacattaaccagt 392  Q
    ||||||||||||||||||||| ||||||||||| |||||| |||| |||||||||||||||||||||||||||||| ||| ||||||| ||||| ||| |    
T  10027164 ttatgatttatatgatattatatttgttatcatatgtgcatcaaatatgtgatatgataaatgtttatcctgtcaatatcctttcctatcattatccaat 10027263  T
Q  393 tctatatcatatactatctatatcctat 420  Q
    | ||||| ||||  ||||| ||||||||    
T  10027264 tgtatattatatcatatctttatcctat 10027291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 183 - 213
Target Start/End: Original strand, 10027054 - 10027084
Alignment:
Q  183 aggttaacaattatgtttgataactttgcag 213  Q
    |||||||||||||||||||||||||||||||    
T  10027054 aggttaacaattatgtttgataactttgcag 10027084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 319 - 420
Target Start/End: Complemental strand, 23318382 - 23318281
Alignment:
Q  319 ttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttcctaacattaaccagttctatatcatatactatctatatcct 418  Q
    |||||||||||  | |||||||| |||||||||||||||||||| || |  ||||| ||||| ||||  | || ||| | |||||| |||||||||| ||    
T  23318382 ttatcatgtgttaaccaaacatgggatatgataaatgtttatccagttactatcatatcctatcattgtctagctctttttcatatcctatctatatact 23318283  T
Q  419 at 420  Q
    ||    
T  23318282 at 23318281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 380
Target Start/End: Original strand, 39645684 - 39645761
Alignment:
Q  303 tatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttccta 380  Q
    |||||||| |||||| ||||||| |||||| ||||||  ||||| ||| |||||||||| | || | |||||||||||    
T  39645684 tatgatatcatgtttcttatcatatgtgcaccaaacaaatgataggatcaatgtttatcttatctatatcatttccta 39645761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 293 - 380
Target Start/End: Complemental strand, 45792043 - 45791956
Alignment:
Q  293 ttatgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttccta 380  Q
    ||||||| ||||||||||||||||||||||||||||| | | |||||| ||||| |||||||||||||| |||| | |||||||||||    
T  45792043 ttatgatatatatgatattatgtttgttatcatgtgtactataaacatatgataggataaatgtttatcatgtctatatcatttccta 45791956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 293 - 357
Target Start/End: Complemental strand, 50004325 - 50004261
Alignment:
Q  293 ttatgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtt 357  Q
    ||||||| |||||||||| ||||||||||||||||||||| ||||||| ||||| ||||||||||    
T  50004325 ttatgatatatatgatatcatgtttgttatcatgtgtgcaccaaacatatgataggataaatgtt 50004261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 293 - 357
Target Start/End: Original strand, 4952092 - 4952156
Alignment:
Q  293 ttatgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtt 357  Q
    ||||||| |||||||||| ||||||||||| ||||||||| ||||||| ||||| ||||||||||    
T  4952092 ttatgatatatatgatatcatgtttgttattatgtgtgcaccaaacatatgataggataaatgtt 4952156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 17746615 - 17746656
Alignment:
Q  315 tttgttatcatgtgtgcaacaaacatgtgatatgataaatgt 356  Q
    ||||||||||||||| |||||||||| |||||||||||||||    
T  17746615 tttgttatcatgtgttcaacaaacatatgatatgataaatgt 17746656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 37346218 - 37346156
Alignment:
Q  304 atgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    ||||||| ||||||||||||||||| ||| ||||||  ||||| ||| |||||||||| ||||    
T  37346218 atgatatcatgtttgttatcatgtgcgcatcaaacacatgataggattaatgtttatcatgtc 37346156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 13040349 - 13040419
Alignment:
Q  296 tgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| ||||    
T  13040349 tgatgtatatgatattatgtttgttatcatgtgtgcatcaaacatatgataggataaatgtttatcttgtc 13040419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 296 - 366
Target Start/End: Original strand, 13110342 - 13110412
Alignment:
Q  296 tgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    |||| |||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| ||||    
T  13110342 tgatgtatatgatattatgtttgttatcatgtgtgcatcaaacatatgataggataaatgtttatcttgtc 13110412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 320 - 365
Target Start/End: Original strand, 39466643 - 39466688
Alignment:
Q  320 tatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgt 365  Q
    |||||| |||||  ||||||||||||||||||||||| ||||||||    
T  39466643 tatcatatgtgccccaaacatgtgatatgataaatgtatatcctgt 39466688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 301 - 420
Target Start/End: Complemental strand, 44762496 - 44762377
Alignment:
Q  301 tatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttcctaacattaaccagttctatatc 400  Q
    ||||| |||| ||||||||||||||||||||| ||||||| ||||| || | ||||||||| |||| | ||| ||||||| | |||  ||||| ||||||    
T  44762496 tatataatatcatgtttgttatcatgtgtgcatcaaacatatgataggacagatgtttatcttgtctatatcttttcctatccttattcagttttatatc 44762397  T
Q  401 atatactatctatatcctat 420  Q
    |||| |||||| ||||||||    
T  44762396 atatcctatctctatcctat 44762377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 40700886 - 40700824
Alignment:
Q  304 atgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    ||||||| ||||||||||||||||||||| ||||||  ||||| ||| |||||||||| ||||    
T  40700886 atgatatcatgtttgttatcatgtgtgcatcaaacacatgataggattaatgtttatcatgtc 40700824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 296 - 361
Target Start/End: Original strand, 24155789 - 24155854
Alignment:
Q  296 tgatttatatgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatc 361  Q
    |||| ||||||||||||||||||||||| |||||||| |||||| |||||| ||||||||||||||    
T  24155789 tgatatatatgatattatgtttgttatcgtgtgtgcatcaaacacgtgataagataaatgtttatc 24155854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 404
Target Start/End: Complemental strand, 37910524 - 37910424
Alignment:
Q  304 atgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtcaacatcatttcctaacattaaccagttctatatcata 403  Q
    |||||||  |||||||||||||||||||| ||||||  ||||||||| |||||||||| |||||  ||||| ||||| | ||  |||||| |||||||||    
T  37910524 atgatatcctgtttgttatcatgtgtgcatcaaacacatgatatgattaatgtttatcatgtcattatcatatcctatctttgtccagttttatatcata 37910425  T
Q  404 t 404  Q
    |    
T  37910424 t 37910424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 366
Target Start/End: Complemental strand, 45499034 - 45498972
Alignment:
Q  304 atgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    |||||||| |||||||||||||||||||| ||||||  ||||||||| |||||||||| ||||    
T  45499034 atgatattgtgtttgttatcatgtgtgcatcaaacacatgatatgattaatgtttatcatgtc 45498972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 319 - 357
Target Start/End: Original strand, 2183997 - 2184035
Alignment:
Q  319 ttatcatgtgtgcaacaaacatgtgatatgataaatgtt 357  Q
    |||||||||||||| ||||||||||||| ||||||||||    
T  2183997 ttatcatgtgtgcaccaaacatgtgataagataaatgtt 2184035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 304 - 366
Target Start/End: Original strand, 12255414 - 12255476
Alignment:
Q  304 atgatattatgtttgttatcatgtgtgcaacaaacatgtgatatgataaatgtttatcctgtc 366  Q
    ||||||| ||||||||||||||||| ||| ||||||  ||||| ||| |||||||||| ||||    
T  12255414 atgatatcatgtttgttatcatgtgcgcatcaaacacatgataagattaatgtttatcatgtc 12255476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University