View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15001_low_6 (Length: 384)
Name: NF15001_low_6
Description: NF15001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15001_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 44000768 - 44001136
Alignment:
| Q |
1 |
ctggaaccctatcatcaccttctctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatg |
100 |
Q |
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| T |
44000768 |
ctggaatcctatcatcaccttcgctacccattcttccgtctgaactcgag-aagaaattttgtgtaggttaccggtgaagatactcctgcaactccgatg |
44000866 |
T |
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| Q |
101 |
catctgcaagtcctggaaatctctaatttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaagaagcgtctcattgtaagcagtgtaaac |
200 |
Q |
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| T |
44000867 |
catctgcaagtcctggaaatctctaatttcaaatgatagtacattcgcaaagaagcagctttgcatgtcaaagaagcgtctcattgtaagcagtgtaaac |
44000966 |
T |
|
| Q |
201 |
gacccaaatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactctactgtcacacagactcaactcaattgcccaattt |
300 |
Q |
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| T |
44000967 |
gatccagatgaactacttctttgggattcctcaatttcatctgttttcagcaatgtatcaaactctactgtcacacagactcaactcaattgcccaattt |
44001066 |
T |
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| Q |
301 |
ccttcaatagtctttttaggttattataaggcaataatttgg-aatttgctcttgccacggtattctctg |
369 |
Q |
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| T |
44001067 |
ccttcaatagtctttttaggttattatacggcaataatttggaaatttgctcttgccacggtattctctg |
44001136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 25 - 304
Target Start/End: Original strand, 43991233 - 43991518
Alignment:
| Q |
25 |
tacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctct |
124 |
Q |
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| T |
43991233 |
tacccactcttccgtttgaacttgtggaagaaatcctgtgtagattaccggtgaagatactcatgcaactccaatgcatctgcaagtcctggaaatctct |
43991332 |
T |
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| Q |
125 |
aatttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaaga----agcgtctcattgtaagcagtgtaaacgacccaaatgaactacttct |
220 |
Q |
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| T |
43991333 |
tatctcgaatgatcgtaaatttgcaaagaagcaccttcgcatgtcaaagagggtagc-actcattgtaagcagtgtaaacgactcaggtgaaccactttt |
43991431 |
T |
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| Q |
221 |
ttgggattcctcaatttcatctgttttcagcaatgtatcaaactct---actgtcacacagactcaactcaattgcccaatttcctt |
304 |
Q |
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| T |
43991432 |
ttgggattcctcaatttcctctgttttcagcaatgcatccaactctagcagcgtcacacagactcaactcatttgcccattttcctt |
43991518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 24 - 309
Target Start/End: Original strand, 43996812 - 43997100
Alignment:
| Q |
24 |
ctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctc |
123 |
Q |
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||||| ||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||||| ||||| |||||||||| ||||||||||||||| ||| |
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| T |
43996812 |
ctacctactcttcggtctgaacttgtggaagaaatattgtgcaggttaccggtgaagatacttctgcagctccgatgcatatgcaagtcctggaaaactc |
43996911 |
T |
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| Q |
124 |
taatttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaagaagcgtctcattgtaagcagtgtaaacgacccaaatgaactacttctttg |
223 |
Q |
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| T |
43996912 |
taatcaccaacgatccttaattttcaaagaagcaccttcgcatgtcaaagaagcatctcattgtaagcagtttaaacgactcaggtgaatcatttctttg |
43997011 |
T |
|
| Q |
224 |
ggattcctcaatttcatctgttttcagcaatgtatcaaactct---actgtcacacagactcaactcaattgcccaatttccttcaata |
309 |
Q |
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| T |
43997012 |
ggattcatcaatttcctctgttttcagcaatgcatccaactctagcagcgtcacacagacacaactcaagtgcccaatttccttgaata |
43997100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 3 - 184
Target Start/End: Complemental strand, 43687183 - 43687002
Alignment:
| Q |
3 |
ggaaccctatcatcaccttctctacccactcttccgtctgaactcgtggaagaaattttgtgtaggttaccggtgaagatactcctgcaattccgatgca |
102 |
Q |
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||||||||| ||||||| | ||| || |||||||| || || ||||||||||| |||||||| ||| |||||||||||| |||| || ||||| |
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| T |
43687183 |
ggaaccctaacatcaccattactatcctttcttccgttcgaccttgtggaagaaatcttgtgtagactactggtgaagatacttttgcagctcaaatgca |
43687084 |
T |
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| Q |
103 |
tctgcaagtcctggaaatctctaatttcaaatgatagtacattcacaaagaagcaccttcgcatgtcaaagaagcgtctcat |
184 |
Q |
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| T |
43687083 |
tctgcaagtcctggaaatctgtaatctcgaatgatcgtaaattctcaaagaagcaccttcgcatgtcaaagaaccatctcat |
43687002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 124
Target Start/End: Complemental strand, 7432894 - 7432842
Alignment:
| Q |
72 |
ccggtgaagatactcctgcaattccgatgcatctgcaagtcctggaaatctct |
124 |
Q |
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| T |
7432894 |
ccggtgaagcttctccttcaattgcgatgcatctgcaagtcgtggaattctct |
7432842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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