View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15002_high_12 (Length: 384)
Name: NF15002_high_12
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_high_12 |
 | |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 15194590 - 15194942
Alignment:
| Q |
18 |
atttgataggttgaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15194590 |
atttgataggtagaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
15194689 |
T |
|
| Q |
118 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15194690 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
15194789 |
T |
|
| Q |
218 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggcaggcataaaagctctttatcgggtctagagatgtgttcatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||| |
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|
| T |
15194790 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggctggcataaaagctcttcatcgggtgtagagatgttttcatg |
15194889 |
T |
|
| Q |
318 |
tcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtctt |
370 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15194890 |
tctgttaacatgccctctaattttgcagtaaattcgtatccacattctgtctt |
15194942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 15215008 - 15215360
Alignment:
| Q |
18 |
atttgataggttgaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215008 |
atttgataggtagaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
15215107 |
T |
|
| Q |
118 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15215108 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
15215207 |
T |
|
| Q |
218 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggcaggcataaaagctctttatcgggtctagagatgtgttcatg |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
15215208 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggctggcataaaagctcttcatcgggtgtagagatgttttcatg |
15215307 |
T |
|
| Q |
318 |
tcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtctt |
370 |
Q |
| |
|
|| || |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
15215308 |
tctgttaacatgccctctaattttgcagtaaattcgtatccacattctgtctt |
15215360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 18 - 292
Target Start/End: Original strand, 15205275 - 15205549
Alignment:
| Q |
18 |
atttgataggttgaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15205275 |
atttgataggtagaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
15205374 |
T |
|
| Q |
118 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15205375 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
15205474 |
T |
|
| Q |
218 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggcaggcataaaagctctt |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
15205475 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggctggcataaaagctctt |
15205549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 372
Target Start/End: Original strand, 14764150 - 14764498
Alignment:
| Q |
18 |
atttgataggttgaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
117 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14764150 |
atttgataggtggagacatttaactcatgtttctgaccactcccaaaagtagcttttaagtctgctgtgcccatattagtttgccacgtcaatttcctgc |
14764249 |
T |
|
| Q |
118 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
217 |
Q |
| |
|
| ||||| |||||||||||||| || |||||||||| |||||| || |||||| ||||||| ||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
14764250 |
cattatgggtgctgaggtaatatgaccgaaatttctcacaaagtgctgacatttctgtcggaaggttacatgtcacactagattgagctggccaagaccc |
14764349 |
T |
|
| Q |
218 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggcaggcataaaagctctttatcgggtctagagatgtgttcatg |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||| ||||||||| |||| ||||| |||||| |||||| |
|
|
| T |
14764350 |
tgttgtcagaacctgcacagtaagtgtaggac------catcacctaactcagggtggttagcattaaagctcttcatcgtgtctacagatgttttcatg |
14764443 |
T |
|
| Q |
318 |
tcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttca |
372 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
14764444 |
tctgtaaacatgccctctaattttgcggtaaattggaatccacattctgtcttca |
14764498 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 14749101 - 14749447
Alignment:
| Q |
18 |
atttgataggttgaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
117 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| | ||||||||| |||||| ||||| |
|
|
| T |
14749101 |
atttgataggtagaaacatttaactcatgtttctgaccattcccaaaagttgcttttaagtctgctgtgcccatctcagtttgccaagacaatctcctgc |
14749200 |
T |
|
| Q |
118 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
217 |
Q |
| |
|
| | || |||| ||||||||| || |||||||| | |||||| | |||||||| ||| | ||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
14749201 |
cattttgattgccgaggtaataagactgaaatttcacacaaagtgccgacatttcagccggtaggttacatgtcacactagattgagttggccaaaaccc |
14749300 |
T |
|
| Q |
218 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggcaggcataaaagctctttatcgggtctagagatgtgttcatg |
317 |
Q |
| |
|
|||||| || || |||| |||||| | | || |||||||||||||||||||| ||||||||||| ||| ||| ||||||||| | |||||| |
|
|
| T |
14749301 |
tgttgttagaacttgcatagtaaggatgggac------catcacctaactcagggtggttggcataaaagcccttcgtcgtgtctagagaagctttcatg |
14749394 |
T |
|
| Q |
318 |
tcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtctt |
370 |
Q |
| |
|
|| ||| ||| ||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
14749395 |
tctttaagcattccctctaattttgaagtaaattggtatccacattctttctt |
14749447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 17564449 - 17564101
Alignment:
| Q |
18 |
atttgataggttgaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
117 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| || | ||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
17564449 |
atttgataggtggagacatttaactcatgtttctgaccactcccaaaagtagcttttaagtctgctgtgcccatattagtttgccacgtcaatttcctgc |
17564350 |
T |
|
| Q |
118 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
217 |
Q |
| |
|
| ||||| |||||||||||||| || |||||||||| |||||| || |||||| ||||||| ||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
17564349 |
cattatgggtgctgaggtaatatgaccgaaatttctcacaaagtgctgacatttctgtcggaaggttacatgtcacactagattgagctggccaagaccc |
17564250 |
T |
|
| Q |
218 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggcaggcataaaagctctttatcgggtctagagatgtgttcatg |
317 |
Q |
| |
|
||||||||| ||||||||||||||||||| || |||||||||||||||||||| |||| ||||||||| |||| ||||| |||||| |||||| |
|
|
| T |
17564249 |
tgttgtcagaacctgcacagtaagtgtaggac------catcacctaactcagggtgggtagcattaaagctcttcatcgtgtctacagatgttttcatg |
17564156 |
T |
|
| Q |
318 |
tcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtcttca |
372 |
Q |
| |
|
|| ||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
17564155 |
tctgtaaacatgccctctaattttgcggtaaattggaatccacattctgtcttca |
17564101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 260 - 370
Target Start/End: Original strand, 17621399 - 17621509
Alignment:
| Q |
260 |
acctaactcagggtggcaggcataaaagctctttatcgggtctagagatgtgttcatgtcggtaaacatgccctctaattttgcagtaaattggtatcca |
359 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||| || | ||||||||| || ||||| || |||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
17621399 |
acctaacttagggtggtcggcataaaagtccttcattgtgtctagagaagttttcatatctgtaaacatgccctctaattttgaggtaaaatggtatcca |
17621498 |
T |
|
| Q |
360 |
cattctgtctt |
370 |
Q |
| |
|
||||||||||| |
|
|
| T |
17621499 |
cattctgtctt |
17621509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Original strand, 17621208 - 17621293
Alignment:
| Q |
18 |
atttgataggttgaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgcca |
103 |
Q |
| |
|
||||||||||| || ||||||||| ||||| ||||||| ||| | ||||| || |||||| ||||||||||||||||||||||||| |
|
|
| T |
17621208 |
atttgataggtggagacatttaacacatgtctctgacctttcccaaaagtagcatttaagactgctgtgcccatattagtttgcca |
17621293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 24394570 - 24394916
Alignment:
| Q |
18 |
atttgataggttgaaacatttaactcatgtttctgaccattctcgaaagttgcttttaagtctgctgtgcccatattagtttgccacgacaatttcctgt |
117 |
Q |
| |
|
||||| ||||| || |||||||||||||| |||||||| ||| | || ||||||||||||||||| |||||| || |||||||| |||||| ||||| |
|
|
| T |
24394570 |
atttggtaggtagagacatttaactcatgcttctgacccttcccaaaggttgcttttaagtctgcaaagcccatgttggtttgccatgacaatctcctgc |
24394669 |
T |
|
| Q |
118 |
cggtatggttgctgaggtaatataacagaaatttctcgcaaagtactaccatttcagtcggaatgttacatgttacactagattgagttggccaagaccc |
217 |
Q |
| |
|
| ||||| ||| |||||||| || |||| |||||||||||| | ||||| ||| | ||| || || | |||||| ||||||||||||||||| |
|
|
| T |
24394670 |
cagtatgtgtgccaaggtaatacgaccgaaacttctcgcaaagtgcagatatttccaccggcaggttgcacgtaatactagactgagttggccaagaccc |
24394769 |
T |
|
| Q |
218 |
tgttgtcaggacctgcacagtaagtgtagcaccatcggcatcacctaactcagggtggcaggcataaaagctctttatcgggtctagagatgtgttcatg |
317 |
Q |
| |
|
|||||| || ||||| |||||||| |||| ||||||| ||||| |||||||||| ||||||||||| || || | ||| |||| || |||||| |
|
|
| T |
24394770 |
tgttgtaagaacctggacagtaagcgtaggaccatcg------cctaagtcagggtggctggcataaaagccctgcattgtgtcctgagaggttttcatg |
24394863 |
T |
|
| Q |
318 |
tcggtaaacatgccctctaattttgcagtaaattggtatccacattctgtctt |
370 |
Q |
| |
|
|| |||||||| ||||||||||||| |||||||| || |||||||| ||||| |
|
|
| T |
24394864 |
tctgtaaacattccctctaattttgatgtaaattgatagccacattcagtctt |
24394916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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