View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_high_16 (Length: 324)
Name: NF15002_high_16
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 19 - 227
Target Start/End: Complemental strand, 6538728 - 6538520
Alignment:
| Q |
19 |
attgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaaagtagtagcagagtaattgattggtgatagatgcatgaagttttaca |
118 |
Q |
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| T |
6538728 |
attgtgttaaaactataaaaatccatgaaagagtgaaaattgaagtgtttgaaagtagtagcagagtaattgattggtgatagatgcatgaagttgtaca |
6538629 |
T |
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| Q |
119 |
tagagagaaagttgttttgtacatcagattttaaagggatggcaatcttgtaaatctcacattgagcaaataagatagattagtctgatacttaagtcat |
218 |
Q |
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| T |
6538628 |
tagagagaaagttgttttgtacatcagcttttaaagggatggcaatcttgtaaatctcacattgagcaaataagatagattagtgtgatacttaagtcat |
6538529 |
T |
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| Q |
219 |
acatacatc |
227 |
Q |
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||||||||| |
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| T |
6538528 |
acatacatc |
6538520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 272 - 318
Target Start/End: Complemental strand, 6538522 - 6538476
Alignment:
| Q |
272 |
atccgttccatttaaacgactagtctattgaattggattcttctcac |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
6538522 |
atccgttccatttaaacgattagtctattgaattggattcttctcac |
6538476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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