View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15002_high_19 (Length: 284)
Name: NF15002_high_19
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_high_19 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 33343272 - 33343540
Alignment:
| Q |
1 |
actaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaaatctcatgtagtgaacactgcatgggctatgctggcactcattga |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343272 |
actaataataacttgtaataaattaacaggtatacacaaacctggaaggaaacaaatctcatgtagtgaacactgcatgggctatgctggcactcattga |
33343371 |
T |
|
| Q |
101 |
agcaggacaggtataatgtagcatattgtgacaagttaaacaaactaagctcaacgccaattatatatagatttagaacataatatataataaataaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33343372 |
agcaggacaggtataatgtagcatattatgacaagttaaacaaactaagctcaacgccaattatatatagaactagaacataatatataataaataaact |
33343471 |
T |
|
| Q |
201 |
cgatattcattattttacggtataggccgaaagagatccaactccattgcatcatgccgccaaggtttt |
269 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33343472 |
cgatattcattattttacggtataggccgaaagagatccaactccattgcatcatgccgccaaggtttt |
33343540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 35123626 - 35123362
Alignment:
| Q |
1 |
actaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaaatctcatgtagtgaacactgcatgggctatgctggcactcattga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35123626 |
actaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaaatctaatgtagtgaacactgcatgggctatgctggcactcattga |
35123527 |
T |
|
| Q |
101 |
agcaggacaggtataatgtagcatattgtgacaagttaaacaaactaagctcaacgccaattatatatagatttagaacataatatataataaataaact |
200 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |
|
|
| T |
35123526 |
agcaggacaggtataatgtagcatattatgacaagttaaacaaactaagctcaacgccaattatagatagaattagaacata----ataataaataaact |
35123431 |
T |
|
| Q |
201 |
cgatattcattattttacggtataggccgaaagagatccaactccattgcatcatgccgccaaggtttt |
269 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
35123430 |
cgatattcattattttacggtataggccgaaagagatccaactccattgcatcatgccgcaaaggtttt |
35123362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 22508272 - 22508395
Alignment:
| Q |
1 |
actaataataacttgtaacaaattaacaggtatacacaaacctggaaggaaacaaatctcatgtagtgaacactgcatgggctatgctggcactcattga |
100 |
Q |
| |
|
|||||||||||| | || |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| || ||||| |
|
|
| T |
22508272 |
actaataataacaggcaaaaaattaacaggtatacacaaacctggaaggaaacaagtctcatgtagtaaacactgcatgggctatgatgggtcttattga |
22508371 |
T |
|
| Q |
101 |
agcaggacaggtataatgtagcat |
124 |
Q |
| |
|
|| ||| ||||||| || |||||| |
|
|
| T |
22508372 |
aggaggccaggtattatatagcat |
22508395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University