View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15002_high_2 (Length: 563)
Name: NF15002_high_2
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 43090656 - 43090992
Alignment:
| Q |
18 |
ggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090656 |
ggaagaatcaaattcttgaaaggtaaagcagttcaaaagttgtaaaagaagaagtggtggaaagtgaaagacccaaaattgtccatggaactcagaaaaa |
43090755 |
T |
|
| Q |
118 |
gaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090756 |
gaagagaagtgaaacagaagaggcccacagtgaaattatatgtatgttcaatgttcattcattcatctgtccctccctatgagcgacttgtccttaaaaa |
43090855 |
T |
|
| Q |
218 |
agatagatac-----ttcagtgtcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccttcccttatagttataacaaatatatcaa |
312 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
43090856 |
agatagatacttcagttcagtgtcctaaaatatctgacacactcttgaatgcattcctagttaatcttcccatcccttatagttataacaaatatatcaa |
43090955 |
T |
|
| Q |
313 |
cttcttcttctgctaaatttcttcaatgtgtgtgtat |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43090956 |
cttcttcttctgctaaatttcttcaatgtgtgtgtat |
43090992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 350 - 544
Target Start/End: Original strand, 43091052 - 43091246
Alignment:
| Q |
350 |
aactccctaaatcaaagaaacagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
449 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091052 |
aactccctaaatcaaagaaaaagtttgtgattgtgtgactcgtaaaaagaaatcgaataattcatctttctttcttctgaatatggttctgttactttta |
43091151 |
T |
|
| Q |
450 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
544 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43091152 |
tgcattaaagctgaaccaataaaagatagctttttagatgaatcaacattgttcctttttccatctccaacaccctactactacctaatacatac |
43091246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University