View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15002_high_22 (Length: 235)
Name: NF15002_high_22
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_high_22 |
 | |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 15 - 235
Target Start/End: Original strand, 51320045 - 51320265
Alignment:
| Q |
15 |
atttccatcggttctacgaatttccatatctattttgctcgtacgttcaaccaacttttcaacaaatttagtttcttccattctcactgcaatatggaga |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320045 |
atttccatcggttctacgaatttccatatcttttttgctagtacgttcaaccaacttttcaacaaatttagtttcttccattctcactgcaatatggaga |
51320144 |
T |
|
| Q |
115 |
gctgtgtctccatccacagtcaagggagtagatatccagttaggatgagttttatcgtaagaggaagctattgcccaatcccctgttgctgctgccatag |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51320145 |
gctgtgtctccatccacagtcaagggagtagatatccagttaggatgagttttatcgtaagaggaagctattgcccaatcccctgttgctgctgccatag |
51320244 |
T |
|
| Q |
215 |
aaatacaccttttatatgttc |
235 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
51320245 |
aaatacaccttttatatgttc |
51320265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 27 - 235
Target Start/End: Original strand, 51344064 - 51344272
Alignment:
| Q |
27 |
tctacgaatttccatatctattttgctcgtacgttcaaccaacttttcaacaaatttagtttcttccattctcactgcaatatggagagctgtgtctcca |
126 |
Q |
| |
|
||||||||||||||||||| ||||| | ||||||| ||||||||||||||||||||| ||| |||||| |||||||||||||| |||||||| |||||| |
|
|
| T |
51344064 |
tctacgaatttccatatcttttttgtttgtacgtttaaccaacttttcaacaaatttgattttttccatcctcactgcaatatgaagagctgtatctcca |
51344163 |
T |
|
| Q |
127 |
tccacagtcaagggagtagatatccagttaggatgagttttatcgtaagaggaagctattgcccaatcccctgttgctgctgccatagaaatacaccttt |
226 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| || || ||||| | |||||||||| |||||||||||||| ||||| | ||| |
|
|
| T |
51344164 |
tccatagtcaagggagtagatatccagttaggatgagttttatcataggatgaagccttattccaatccccttttgctgctgccatacaaataatctttt |
51344263 |
T |
|
| Q |
227 |
tatatgttc |
235 |
Q |
| |
|
||||||||| |
|
|
| T |
51344264 |
tatatgttc |
51344272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 90 - 232
Target Start/End: Original strand, 51314288 - 51314430
Alignment:
| Q |
90 |
ttccattctcactgcaatatggagagctgtgtctccatccacagtcaagggagtagatatccagttaggatgagttttatcgtaagaggaagctattgcc |
189 |
Q |
| |
|
||||||| ||| ||||| ||||| || |||||||||| |||| |||| |||||||||||| |||||||||| |||||| || || ||||| || ||| |
|
|
| T |
51314288 |
ttccattgccaccgcaatgtggagtgccgtgtctccatttgcagttaaggtagtagatatccaattaggatgagatttatcatatgatgaagccatagcc |
51314387 |
T |
|
| Q |
190 |
caatcccctgttgctgctgccatagaaatacaccttttatatg |
232 |
Q |
| |
|
|||||||||| ||| ||||||||| |||||| |||||||||| |
|
|
| T |
51314388 |
caatcccctgatgcagctgccatacaaatactacttttatatg |
51314430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University