View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_high_6 (Length: 477)
Name: NF15002_high_6
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 18 - 454
Target Start/End: Original strand, 3724339 - 3724784
Alignment:
| Q |
18 |
agaattagcgttatttgatacaaatagaaatagattcaatgcaaacaaccattggtatggcttacttgacaacattatgggtatttaacacttccacttt |
117 |
Q |
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| T |
3724339 |
agaattagcgttatttgatacaaatagaaatagattcaatgcaaacaaccattggtatggcttacttgacaacattctgggtagttaacacttccacttt |
3724438 |
T |
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| Q |
118 |
actgtaattggagctaggctttacaacctttggagcaacggaagaaacatagagnnnnnnntgtcatgaccacatttgtaaataacaaaagatgtagtta |
217 |
Q |
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| T |
3724439 |
actgtaattggagctaggctttacaacctttggagcaacgaaagaaacatagagaaaaaaatgtcatgaccacatttgtaaataacaaaagatgtagtta |
3724538 |
T |
|
| Q |
218 |
atagttatatgcctgacaacttaagaactaa-----------atgttagatataaaaaacacgcttaacttgccctaacannnnnnnnnnnngaataaaa |
306 |
Q |
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| T |
3724539 |
atagttatatgcttgacagcttaagaactaaacgttaaatacatgttagatataaaaaacacgcttaacttgccctaaca--ttttttttttgaaaaaat |
3724636 |
T |
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| Q |
307 |
atttgccctaacattgcatcttttatatagccaacattttattcattcataggtgatgacttacattctagttaaatacaaaacctgaatacaagtagat |
406 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3724637 |
ttttgccctaacattgcatcttttatatatccaacattttatccattcataggtgatgacttacattctagttaaatacaaaacctgaatacaagtagat |
3724736 |
T |
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| Q |
407 |
tttacactagtagtcgggtgtgtatgttagtaggtgtgacaaactaat |
454 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
3724737 |
tttacactagtagtcgtgtgtgtatgttagtaggtgtgacaaactaat |
3724784 |
T |
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