View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15002_high_7 (Length: 474)

Name: NF15002_high_7
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15002_high_7
NF15002_high_7
[»] chr4 (2 HSPs)
chr4 (1-461)||(10124260-10124720)
chr4 (94-460)||(28649862-28650229)
[»] chr3 (4 HSPs)
chr3 (37-457)||(25040650-25041070)
chr3 (47-460)||(25044385-25044798)
chr3 (66-456)||(25042801-25043190)
chr3 (321-418)||(54479360-54479457)
[»] chr2 (3 HSPs)
chr2 (27-457)||(21392762-21393192)
chr2 (71-460)||(21422111-21422509)
chr2 (321-424)||(1975176-1975279)
[»] chr1 (1 HSPs)
chr1 (66-460)||(24690576-24690970)
[»] chr7 (1 HSPs)
chr7 (381-454)||(39600467-39600540)


Alignment Details
Target: chr4 (Bit Score: 425; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 461
Target Start/End: Complemental strand, 10124720 - 10124260
Alignment:
1 caccaccacctcaagatattgttgacaaccatgctcctgttcgttctcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggc 100  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
10124720 caccaccacctcaagatgttgttgataaccatgctcctgttcgttctcgccgacgaggtccgcctcgtaacggaccaatccctactccattcatatgggc 10124621  T
101 caccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaag 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||||||||||||| |||||||    
10124620 caccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacatcaccggcgatgttaaatgcaagagttgtcaaacaaag 10124521  T
201 ttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttga 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
10124520 ttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttagttacaaacttcaacaccatgcatgatagggcaccagagactttga 10124421  T
301 tgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgtt 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
10124420 tgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaaaccggtaattgctgagaagaaaaagaatatcaattggttgtttctgtt 10124321  T
401 gctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataat 461  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
10124320 gctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataat 10124260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 94 - 460
Target Start/End: Complemental strand, 28650229 - 28649862
Alignment:
94 tatgggccaccgaccgccgagcaaaaatt-cacagcttgaaccatcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtc 192  Q
    ||||||| ||| |||| |||||||||| | |||| | | || |||||||| |||||   |||||||||||||| ||| || ||||| |||||||||||||    
28650229 tatgggcaacctaccgtcgagcaaaaaatgcacaacctcaatcatcttctacaaaatgaaatctttaacatcatgggtgacgttcaatgcaagagttgtc 28650130  T
193 taacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccaga 292  Q
     ||| || ||||| |||||||||||||| |||||||||||||||| |||||| ||||||| | | | |||| | || |||||||||||||||||||||      
28650129 aaacgaaattccaaatgtcgtttgattttgtggcgaaattcgatgcaatctctcaatattcgatcataaacatgaataccatgcatgatagggcaccatg 28650030  T
293 gactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttg 392  Q
    || ||||||| |||| ||||||   |   |||| || |||||||  ||||||  |||||||||| ||||||||||||||||||||||||| |||||||||    
28650029 gattttgatgaatcctagattgccaagaagtgttcaatgcaatcgtgaaaacaatgtgaagccgataattgctgagaagaaaaagaatattaattggttg 28649930  T
393 tttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 460  Q
    ||| ||||| | |||||||||||||||||||| || ||| |||||||||| |||||||||||||||||    
28649929 tttttgttgttgggacaaatgcttggttgttgcaatcttaaacaattgaagtatttttgcaagtataa 28649862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 37 - 457
Target Start/End: Complemental strand, 25041070 - 25040650
Alignment:
37 ctgttcgttctcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaacca 136  Q
    ||||| || ||||| ||||||| || || |||| |||||  ||||| || || ||||||||||| ||||| |||||||||||||| |||||| | || ||    
25041070 ctgtttgtcctcgctgacgaggaccaccacgtagcggacagatccccatccctttcatatgggcaaccgatcgccgagcaaaaatccacagcctcaatca 25040971  T
137 tcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgat 236  Q
    |||  | ||||||||||||||||||||||| ||||||||||| ||||| |||||   |||||||||||| ||||| ||||||||| ||| ||||||| ||    
25040970 tctcttacaaaacagaatctttaacatcaccggcgatgttcaatgcaatagttgcaaaacaaagttccaaatgtcttttgatttgttggtgaaattcaat 25040871  T
237 gtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatc 336  Q
    | |||||| |||||||||||||||||| | |||||||||||||||||||||||| | | ||||||| |||||| ||||   || ||| ||||||||||||    
25040870 gaaatctctcaatatttggttacaaacatgaacaccatgcatgatagggcaccacaaattttgatgaatccaaaattgccaaaatgtttgcattgcaatc 25040771  T
337 aagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaaca 436  Q
    |||||||  |||| || ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||||| |||||||||||    
25040770 aagaaaatagtgttaaaccggtgattgctgagaagaaaaagaatatcaattggttgtttctgttgctgggacaaataattggttgttgcaagcttgaaca 25040671  T
437 attgaaatatttttgcaagta 457  Q
    |||||| ||||||||||||||    
25040670 attgaagtatttttgcaagta 25040650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 47 - 460
Target Start/End: Complemental strand, 25044798 - 25044385
Alignment:
47 tcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaa 146  Q
    ||||||||||||||  || ||||| |  ||||||||  | || ||| ||||||| ||||||||||||||||||||||||| | | |  |||||||| |||    
25044798 tcgccgacgaggtctaccacgtaatgatccaatcccagtccctttcgtatgggcaaccgaccgccgagcaaaaattcacaaccttagtcatcttctacaa 25044699  T
147 aacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctccc 246  Q
    ||  |||||||||||||||| || || ||||| ||||||||||| | |||||| || || ||||| || ||||||||||| ||||| ||||||||| | |    
25044698 aatggaatctttaacatcaccggtgaggttcaatgcaagagttgccaaacaaaatttcaaatgtccttcgatttggtggcaaaatttgatgtaatcgctc 25044599  T
247 aatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactg 346  Q
    | |||||||| |||||| | || |||||||||||||||||||| |  | ||||||| |||||||||||   |  ||||||||||||||  |||||||| |    
25044598 agtatttggtcacaaacatgaataccatgcatgatagggcaccgggaattttgatgaatccaagattgccaagatgtgtgcattgcaacaaagaaaacag 25044499  T
347 tgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatat 446  Q
    |||||||||| ||||||| |||||||| |||||||||||||||||||||||| || | ||||||||||| |||||||| || ||| |||||||||| |||    
25044498 tgtgaagccgataattgccgagaagaagaagaatatcaattggttgtttctgctgttgggacaaatgctgggttgttgcaatcttaaacaattgaagtat 25044399  T
447 ttttgcaagtataa 460  Q
    ||||||||||||||    
25044398 ttttgcaagtataa 25044385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 66 - 456
Target Start/End: Complemental strand, 25043190 - 25042801
Alignment:
66 cgtaacggaccaatccctattccattcatat--gggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacat 163  Q
    |||||||||||||||||||| || |||||||  |||| ||| ||||||||| ||||||| | ||  | || ||||||||| ||||| ||||||||||  |    
25043190 cgtaacggaccaatccctatccctttcatatatgggctaccaaccgccgagaaaaaattgatagtctcaatcatcttctctaaaacggaatctttaatgt 25043091  T
164 cacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaac 263  Q
    |||   ||| |||||  |||||||||| | || ||||||| | ||| |||| ||||||||| ||||||| || |||||||  ||||||||||| ||||||    
25043090 cactatcgacgttcaacgcaagagttgccaaataaagttctaaatgacgttcgatttggtgacgaaatttgacgtaatctatcaatatttggtcacaaac 25042991  T
264 ttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattg 363  Q
     | |||||||| |||||||||||||||  |  ||||||||||||||||||| |||||||||||||||   ||| ||| |   ||||||| | |||| |||    
25042990 atgaacaccatacatgatagggcaccaacgcttttgatgtatccaagattgctgaagtgtgtgcatt--tatcgagata---gtgtgaaactggtacttg 25042896  T
364 ctgagaagaaaaag--aatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagt 456  Q
    |  |||||||||||  |||||||| | | || |||||||| | |||||||||||||| || || |||||||||| | |||||||| ||| |||||    
25042895 ccaagaagaaaaagataatatcaactagatgcttctgttgttgggacaaatgcttggctgctgcaagcttgaaccactgaaatatattttcaagt 25042801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 321 - 418
Target Start/End: Original strand, 54479360 - 54479457
Alignment:
321 tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttgg 418  Q
    |||||||| || |||||| ||||| |||||||||||||||||||||| ||||||  || |||||| ||| ||||||||||  ||||||||||||||||    
54479360 tgtgtgcactgtaatcaacaaaacagtgtgaagccggtaattgctgacaagaaacggagtatcaactggctgtttctgttattaggacaaatgcttgg 54479457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 179; Significance: 2e-96; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 27 - 457
Target Start/End: Original strand, 21392762 - 21393192
Alignment:
27 aaccatgctcctgttcgttctcgccgacgaggtccgcctcgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcaca 126  Q
    |||||| ||| ||||| | ||||||||||| || | || |||| ||||||||| ||||| || ||||||||||| ||| | | |||||||||||| ||||    
21392762 aaccatactcatgttcctcctcgccgacgaagtgcaccacgtagcggaccaattcctatccctttcatatgggcaaccaatcaccgagcaaaaatccaca 21392861  T
127 gcttgaaccatcttctccaaaacagaatctttaacatcacgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggc 226  Q
     | | || |||||  | ||||||| |||||||| |||||| ||||||||||| ||||||||||| | ||||||||| || ||| |||| ||| ||    |    
21392862 acctcaatcatctcttacaaaacaaaatctttagcatcaccggcgatgttcaatgcaagagttgccaaacaaagtttcaaatgccgttcgatctgcgtac 21392961  T
227 gaaattcgatgtaatctcccaatatttggttacaaacttcaacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtg 326  Q
    |||||||||||||||||| |||||||||||||| ||| | |||||||||||||||||||||||| |||  |||||| |||||||| ||   |  ||||      
21392962 gaaattcgatgtaatctctcaatatttggttacgaacatgaacaccatgcatgatagggcaccaaagatcttgatgaatccaagactgccaagatgtgca 21393061  T
327 cattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgta 426  Q
    |||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| |    
21393062 cattgcaatcaagaaaacagtgtgaaaccggtaattgccgagaagaaaaagaatatcaattggttgtttctattgctgggacaaatgctcggttgttgca 21393161  T
427 agcttgaacaattgaaatatttttgcaagta 457  Q
    |||||||||||||||| ||||||||||||||    
21393162 agcttgaacaattgaagtatttttgcaagta 21393192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 7e-84
Query Start/End: Original strand, 71 - 460
Target Start/End: Original strand, 21422111 - 21422509
Alignment:
71 cggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacatcacgggc 170  Q
    |||||||||||||||| | ||||||||||  || || ||||| |||||||| |||||| | || |||||  | ||||||| ||||||||  ||||| ||     
21422111 cggaccaatccctattactttcatatgggaaactgatcgccgtgcaaaaatccacagcctaaatcatctcttacaaaacaaaatctttagtatcactggt 21422210  T
171 gatgt-----tcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaactt 265  Q
    || ||     ||| ||||||||||| | |||||||||||| |||||||| ||||||   || ||||| ||||||||||| | |||||||||||||||| |    
21422211 gacgtgacgttcaatgcaagagttgccgaacaaagttccaaatgtcgttcgatttgcaagcaaaatttgatgtaatctctcgatatttggttacaaacat 21422310  T
266 caacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgct 365  Q
     |||| ||||||||||||||||||||||| ||||||| |||||| ||||   || |||||||||||||||||||||||| |||| |||||  ||||||||    
21422311 gaacaacatgcatgatagggcaccagagaatttgatgaatccaaaattgcctaaatgtgtgcattgcaatcaagaaaacagtgtcaagccaataattgct 21422410  T
366 gagaagaaaaagaatatcaattggttgtttctgttgct----aggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 460  Q
    |||||||||||||||||| |||||||||||||||||||     |||||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
21422411 gagaagaaaaagaatatctattggttgtttctgttgctggccgggacaaatgcttggttgttgcaagcttgaacatttgaagtatttttgcaagtataa 21422509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 321 - 424
Target Start/End: Complemental strand, 1975279 - 1975176
Alignment:
321 tgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgctgagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggtt 420  Q
    ||||| |||||||||||| ||||  ||||||| || ||||||||| |||||||||||| |||||||||||||||| ||||| | ||||||||||||||||    
1975279 tgtgtacattgcaatcaaaaaaatagtgtgaaacctgtaattgctaagaagaaaaagagtatcaattggttgtttatgttgatgggacaaatgcttggtt 1975180  T
421 gttg 424  Q
    ||||    
1975179 gttg 1975176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 139; Significance: 2e-72; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 66 - 460
Target Start/End: Complemental strand, 24690970 - 24690576
Alignment:
66 cgtaacggaccaatccctattccattcatatgggccaccgaccgccgagcaaaaattcacagcttgaaccatcttctccaaaacagaatctttaacatca 165  Q
    |||| ||||||||||| ||| || | | ||||| | ||||||| ||||||||||||||||||| | || |||||  | ||||| | ||| ||||||||||    
24690970 cgtagcggaccaatccatataccttacttatggacaaccgaccaccgagcaaaaattcacagcctcaatcatctcttacaaaatacaatttttaacatca 24690871  T
166 cgggcgatgttcagtgcaagagttgtctaacaaagttccagatgtcgtttgatttggtggcgaaattcgatgtaatctcccaatatttggttacaaactt 265  Q
    |    || ||||| ||||||||||| | |||||||||| | || || ||||||||| |||  |||| ||| ||||| |||||||| ||||||||||||||    
24690870 ccaatgacgttcaatgcaagagttgacaaacaaagttctaaatatcttttgatttgttggaaaaatgcgacgtaatttcccaatagttggttacaaactt 24690771  T
266 caacaccatgcatgatagggcaccagagactttgatgtatccaagattgatgaagtgtgtgcattgcaatcaagaaaactgtgtgaagccggtaattgct 365  Q
     |||||||||||||||||||||  | ||| ||||||| |||||||||||   || ||||| |||||||||||||||| |  ||||||||||||||||  |    
24690770 gaacaccatgcatgatagggcaagaaagattttgatgaatccaagattgtcaaaatgtgtacattgcaatcaagaaaccaatgtgaagccggtaattatt 24690671  T
366 gagaagaaaaagaatatcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaagtataa 460  Q
    ||||||||||||||||||||||| ||||||||||| ||  |||||||| |||||||||| |||| |||| |||| |  |||||||||||||||||    
24690670 gagaagaaaaagaatatcaattgattgtttctgtttctgagacaaatgattggttgttgcaagcatgaataattaaggtatttttgcaagtataa 24690576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 381 - 454
Target Start/End: Complemental strand, 39600540 - 39600467
Alignment:
381 atcaattggttgtttctgttgctaggacaaatgcttggttgttgtaagcttgaacaattgaaatatttttgcaa 454  Q
    ||||||||||||||| ||||| | || || ||| |||| ||||| |||||| |||| ||||||||||| |||||    
39600540 atcaattggttgtttttgttgttgggtcagatgattgggtgttgcaagcttcaacatttgaaatatttctgcaa 39600467  T

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