View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_low_1 (Length: 665)
Name: NF15002_low_1
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-126; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-126
Query Start/End: Original strand, 14 - 275
Target Start/End: Complemental strand, 38587940 - 38587680
Alignment:
| Q |
14 |
gttccttctcttgttgtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgagtttgtatttggtttctttgg |
113 |
Q |
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| T |
38587940 |
gttccttctcttgttgtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgaggttgtattttgtttctttgg |
38587841 |
T |
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| Q |
114 |
ccgattggaattgttactaagatccattgcatagaaagctaccgctagttggtttggcaattgtcatcaaagttgcaacaaggggacagatttggaagtt |
213 |
Q |
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| T |
38587840 |
ccaattggaattgttactaagatccattgcatagaaagcta-tgctagttggtttggcaattgtcatcaaaattgcaacaaggggacagatttggaagtt |
38587742 |
T |
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| Q |
214 |
atgatttatagtagcaatcacgctagaaaggtatttggtatatgcatttgtttggtcactta |
275 |
Q |
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| T |
38587741 |
atgatttatagtagcaatcgcgctagaaaggtatttggtatatgcatttgtttggtcactta |
38587680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 273 - 490
Target Start/End: Complemental strand, 38584905 - 38584688
Alignment:
| Q |
273 |
ttaataatagtacgtagtaatgagtttgggattttgttgatacgacgtggtgtggtgtttgatactattctcggtgcaattatggagttgattatgattt |
372 |
Q |
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| T |
38584905 |
ttaataatagtacgtagtaatgagtttgagattttgttgatacgacgtggtgtggtgtttgatactattctcggtgcaattatggagttgattctgattt |
38584806 |
T |
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| Q |
373 |
gcttggtcacttctaatgttattgtgcttctctgatttggcgttcgaattgtgggttagctgtgtgactgaattggttatgtgtgtgctattagactttt |
472 |
Q |
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| T |
38584805 |
tcttggtcacttcttatgttattgtgcttctttgatttggtgttcgaattgtgggttagctgtgtgactgaattggttatgtgtgtgctattagattttt |
38584706 |
T |
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| Q |
473 |
tgtcggttgactcctctc |
490 |
Q |
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| T |
38584705 |
tgtcggttgactcctctc |
38584688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 607 - 665
Target Start/End: Complemental strand, 38584568 - 38584510
Alignment:
| Q |
607 |
atgacttttgtgctgttggggttcgacttttccggtctccttattgttctttggtttga |
665 |
Q |
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| T |
38584568 |
atgacttttgtggtgttggggttcgacttttccggtctccttattgttttttggtttga |
38584510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 2e-81; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 14 - 339
Target Start/End: Original strand, 21812796 - 21813116
Alignment:
| Q |
14 |
gttccttctcttgttgtttgaaagtactcgattgaagaaataattttatgccttccgtcattgatttgttcgtatttgagtttgtatttggtttctttgg |
113 |
Q |
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| T |
21812796 |
gttccttctcttgttgtttgaaagtactcaattgaagaaagaattttgtgccttccgtcattaatccattcgtgtttgaggttgtatttgccta-tttgg |
21812894 |
T |
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| Q |
114 |
ccgattggaattgtt-actaagatccattgcatagaaagctaccgctagttggtttggcaattgtcatcaaagttgcaacaaggggacagatttggaagt |
212 |
Q |
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| T |
21812895 |
ccaattggaattgtttactaagatccattacgtagaaatctacatctagttagtttggcatttgtcatcaaaattgcaataaggggacatatttggaagt |
21812994 |
T |
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| Q |
213 |
tatgatttatagtagcaatcacgctagaaaggtatttggtatatgcatttgtttggtcacttaataatagtacgtagtaatgagtttgggattttgttga |
312 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| | | |||| |||||||||||||||| |||||| ||| |
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| T |
21812995 |
tatgatttataatagcaatcacgttagaaaggtatttggtatatgcatttgtttggtcacatgagaata----gtagtaatgagtttggaattttg-tga |
21813089 |
T |
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| Q |
313 |
tacgacgtggtgtggtgtttgatacta |
339 |
Q |
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| T |
21813090 |
tttgacgctgtgtggtgtttgatacta |
21813116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 336 - 486
Target Start/End: Original strand, 21813321 - 21813474
Alignment:
| Q |
336 |
actattctcggtgcaattatggagttgattatgatttgcttggtcacttctaatgttattgtgcttct---ctgatttggcgttcgaattgtgggttagc |
432 |
Q |
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| T |
21813321 |
actattctcgatgcaattatggaattgattatgattttcttggtcactgcttatgttagtgtggttctatgttgatttggcatttgaaatgtgggttagt |
21813420 |
T |
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| Q |
433 |
tgtgtgactgaattggttatgtgtgtgctattagactttttgtcggttgactcc |
486 |
Q |
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| T |
21813421 |
tgtgtgactgaattgattgtatgtgtgctgttagatttcttgttggttgactcc |
21813474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 612 - 664
Target Start/End: Original strand, 21813608 - 21813660
Alignment:
| Q |
612 |
ttttgtgctgttggggttcgacttttccggtctccttattgttctttggtttg |
664 |
Q |
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||||||| |||| ||||||| ||||||||||||||||||||| |||| |||| |
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| T |
21813608 |
ttttgtggtgtttgggttcggattttccggtctccttattgttttttgatttg |
21813660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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