View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_low_10 (Length: 410)
Name: NF15002_low_10
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 157 - 367
Target Start/End: Complemental strand, 82194 - 81982
Alignment:
| Q |
157 |
aagaatggaaagccattgccgacctccatgtctttcaagcgacttggcttttaaatataccgaaattagacaagtagatgtagcc-ttttctttttacaa |
255 |
Q |
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| T |
82194 |
aagaatggaaagccattgccgacctccatgtctttcaagcgacttggcttttaaatataccgaaattagacaagtagatgtagcctttttttttttacaa |
82095 |
T |
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| Q |
256 |
aaggttttctctaggttatataaaagatattattgacgttgttatgaaaaactttcacgaaagac--tatgataataaatattaacgttgtcatgaaaaa |
353 |
Q |
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| T |
82094 |
aaggttttctctaggttatataaaagatattattgacgttgttatgaaaaactttcatgaaagacaatatgataataaatattaacgttgtcatg-aaaa |
81996 |
T |
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| Q |
354 |
tgaggtaaatagat |
367 |
Q |
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| T |
81995 |
tgaggtaaatagat |
81982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 50 - 160
Target Start/End: Complemental strand, 82354 - 82243
Alignment:
| Q |
50 |
cgttgttttcctaaaaattgaatctggtattccccggatacgtctcaggg-aaagaataaaggtctagctatattttatctttttcaacaagttaaataa |
148 |
Q |
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|||||||| ||||||||| ||||||||||||| || ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
82354 |
cgttgtttccctaaaaatcgaatctggtattctccaaatacgtctcgggggaaagaataaaggtctagctatattttatctttttcaacaagttaaataa |
82255 |
T |
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| Q |
149 |
ttttatgcaaga |
160 |
Q |
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| T |
82254 |
ttttatgcaaga |
82243 |
T |
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