View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_low_11 (Length: 384)
Name: NF15002_low_11
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 38108534 - 38108152
Alignment:
| Q |
1 |
ttgaattttcttttaatctataacaaacgggtgtgttatctcatcagtaaaagcataaatttcatgttagaccacaaacataatctgatacaagaaatca |
100 |
Q |
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| T |
38108534 |
ttgaattttcttttaatctataacaaacgggtgtgttatctcatcaataaaagcataaatttcatgttagaccacaaacataatttgagacaagaaatca |
38108435 |
T |
|
| Q |
101 |
ataagcatagaacttaatcatgtttaaaagtgctaccattttaaatccgcggtactcaacagttggcatgtatgaatatttcaaatttcaatcaccctac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
38108434 |
ataagcatagaacttaatcatgtttaaaagtgctaccattttaaatccgcggtactcaacagttggcatgtatgaatatttcaaatgacaatcaccctac |
38108335 |
T |
|
| Q |
201 |
caattcttcaaaggctactaacactatagaggctact-----------------aacacataatacacccaagaaagaaagtagtttacataactaacta |
283 |
Q |
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|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38108334 |
caattcttcaaaggctactaacactatagaggaaactttaatttacaattggacaacacataatacacccaagaaagaaagtagtttacataactaacta |
38108235 |
T |
|
| Q |
284 |
tctgatacaagag-aaaaaattattcatgtttaatgtgacacattcttttgagggtagatgccgagagaacaaatgtagcaga |
365 |
Q |
| |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
38108234 |
tctgatacaagagaaaaaaattattcatgtttaatgtgacacattcttttgagggtagatgccgagagaacaaatgtaacaga |
38108152 |
T |
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