View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_low_13 (Length: 348)
Name: NF15002_low_13
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 91 - 331
Target Start/End: Complemental strand, 52795136 - 52794891
Alignment:
| Q |
91 |
ggtcttaagcaaaga--acatttgtccgtgatttcaaatgttt--agatacggccatgcgtgttacactatggtccccc-taatcttgatgactgtggtg |
185 |
Q |
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| T |
52795136 |
ggtcttaagcaaatataacatttgtccgtgatttcaaatgtttttagatacggccatgcgtgttacactatggtcccccctaatcttgatgactgtggtg |
52795037 |
T |
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| Q |
186 |
agcttgaattgaacaatggtaatggtcccagaacagaattaatggttactatatattccgtaccaattaaaaatgccagtattcaattgccaatgctgtc |
285 |
Q |
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| T |
52795036 |
agcttgaattgaacaatggtaatggtcccagaacagaattaatggttactatatattccgtaccaattaaaaatgccagtattcaattgccaatgctgtc |
52794937 |
T |
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| Q |
286 |
ttatacgtcgtttgtgcatgaccatatacaaacttatgtttcgtgt |
331 |
Q |
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| T |
52794936 |
ttatacgtcgtttgtgcatgaccatatacaaacttatgtttcgtgt |
52794891 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 59
Target Start/End: Complemental strand, 52795223 - 52795166
Alignment:
| Q |
2 |
aaaagattggaagaataaaatctagacaaaagatgtatacatttttttgaggaatgat |
59 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52795223 |
aaaagataggaagaataaaatctagacaaaagatgtatacatttttttgaggaatgat |
52795166 |
T |
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