View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_low_14 (Length: 332)
Name: NF15002_low_14
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 7e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 53 - 250
Target Start/End: Complemental strand, 3861676 - 3861466
Alignment:
| Q |
53 |
ttgtatgttgtagaagtgttattgtaggctgtagaagtgttgttgctgctgtnnnnnnntgttgtggtatatttacaaat-------------cttgcgt |
139 |
Q |
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| T |
3861676 |
ttgtatgttgtagaagtgttattgtaggctgtagaagtgttgttgctgctgtaaaaaaatgttgtggtatatttacaaatttgttttgtgtatcttgcgt |
3861577 |
T |
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| Q |
140 |
gttgcatgtgtattcttgttgttcagttgtttgattgttttatggtagtggctttgtggtgcattttatttaaaagatattgttggttgtagttaaatgt |
239 |
Q |
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| T |
3861576 |
gttgcatgtgtattcttgttgttcagttgtttgattgttttatggtagtggctttgtggtgcattttatttaaaagatattgttggttgtagttaaatgt |
3861477 |
T |
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| Q |
240 |
tactttggaaa |
250 |
Q |
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| T |
3861476 |
tactttggaaa |
3861466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 234 - 317
Target Start/End: Complemental strand, 3861324 - 3861241
Alignment:
| Q |
234 |
aaatgttactttggaaaccctcaaagttaagaccagattggaaaaatcttctaactcaaatatattataggatttagatgattt |
317 |
Q |
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| T |
3861324 |
aaatgttactttggaaaccctcaaagttaagaccagattggaaaaatcttctaactcaaatatattataggatttagatgattt |
3861241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 97
Target Start/End: Original strand, 32477249 - 32477300
Alignment:
| Q |
46 |
aaaattgttgtatgttgtagaagtgttattgtaggctgtagaagtgttgttg |
97 |
Q |
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| T |
32477249 |
aaaattgttgtatgttttagaagtgttgttgaaggctgtagaagtgttgttg |
32477300 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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