View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_low_15 (Length: 331)
Name: NF15002_low_15
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 6 - 315
Target Start/End: Complemental strand, 55245116 - 55244805
Alignment:
| Q |
6 |
agtgaaatgaaacgagggtttcattactttttctgcttacca-tatttcatttcattgataaattcatctgatctcaaccttcacctttttctcttactt |
104 |
Q |
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||||||| |||||||||||||||||||||||||||||| | || |||||||| |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
55245116 |
agtgaaacgaaacgagggtttcattactttttctgcttgggactaccatatttcattcataaattcatctcatctcaaccttcacctttttctcttactt |
55245017 |
T |
|
| Q |
105 |
-gtttacatcaccttcagctatatatcacatcaatcatcttgtgctttggcttttcgactccaattttattattaatttctcagttgcaggcaatgtttg |
203 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
55245016 |
tgtttacatcaccttcagctatatatgacatcaatcatcttgtgctttggcttttcgactccaattttatgtttaatttctcagttgcaggcaatgtttg |
55244917 |
T |
|
| Q |
204 |
ttgtactatttattatggtggccaagtacaagtacaaactaactagctaactagctagcttgtttgtatatcatgtgtatgttattaaaatataaaataa |
303 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55244916 |
ttgtactatttattatgttggccaagtacaagtacaaactaactagctaactagctagcttgtttgtatatcatgtgtatgttattaaaatataaaataa |
55244817 |
T |
|
| Q |
304 |
ttcgggtctttt |
315 |
Q |
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|||||||||||| |
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| T |
55244816 |
ttcgggtctttt |
55244805 |
T |
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