View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15002_low_18 (Length: 299)

Name: NF15002_low_18
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15002_low_18
NF15002_low_18
[»] chr7 (15 HSPs)
chr7 (10-290)||(3861871-3862151)
chr7 (145-289)||(23313361-23313504)
chr7 (46-289)||(294866-295106)
chr7 (144-289)||(23107989-23108133)
chr7 (38-289)||(23759600-23759852)
chr7 (52-282)||(11279500-11279730)
chr7 (54-282)||(46846320-46846549)
chr7 (46-289)||(36222309-36222552)
chr7 (45-289)||(33312996-33313240)
chr7 (77-282)||(24783417-24783624)
chr7 (77-289)||(36842967-36843181)
chr7 (46-289)||(6967149-6967393)
chr7 (46-289)||(17866353-17866597)
chr7 (191-289)||(17863240-17863338)
chr7 (212-289)||(9765803-9765880)
[»] chr8 (8 HSPs)
chr8 (46-281)||(12575300-12575535)
chr8 (46-289)||(14418467-14418707)
chr8 (149-292)||(41778847-41778988)
chr8 (211-281)||(13097030-13097100)
chr8 (225-279)||(44008307-44008361)
chr8 (146-246)||(41836294-41836394)
chr8 (238-289)||(41836415-41836466)
chr8 (239-278)||(14418396-14418435)
[»] chr4 (9 HSPs)
chr4 (46-282)||(2541893-2542128)
chr4 (77-289)||(26062720-26062937)
chr4 (46-222)||(12172041-12172218)
chr4 (46-289)||(647203-647447)
chr4 (46-289)||(650475-650719)
chr4 (146-246)||(11649305-11649405)
chr4 (238-289)||(11649426-11649477)
chr4 (243-289)||(26060589-26060635)
chr4 (150-249)||(26060653-26060752)
[»] chr2 (8 HSPs)
chr2 (45-282)||(36326935-36327172)
chr2 (77-289)||(23673375-23673588)
chr2 (46-274)||(31528406-31528635)
chr2 (46-265)||(13710097-13710315)
chr2 (52-278)||(40017992-40018218)
chr2 (99-289)||(16294900-16295090)
chr2 (74-289)||(31626551-31626766)
chr2 (46-289)||(32575685-32575930)
[»] chr5 (12 HSPs)
chr5 (48-288)||(11988864-11989108)
chr5 (46-274)||(15532200-15532429)
chr5 (48-274)||(15542384-15542611)
chr5 (49-289)||(33575091-33575331)
chr5 (45-289)||(22159746-22159993)
chr5 (77-289)||(14616459-14616672)
chr5 (46-147)||(26711464-26711564)
chr5 (46-147)||(26981201-26981301)
chr5 (46-289)||(34405850-34406094)
chr5 (77-282)||(7649972-7650178)
chr5 (191-277)||(26712487-26712574)
chr5 (191-277)||(26982225-26982312)
[»] chr1 (14 HSPs)
chr1 (47-289)||(1936628-1936873)
chr1 (145-289)||(34066346-34066489)
chr1 (145-289)||(16190279-16190421)
chr1 (116-282)||(39546251-39546417)
chr1 (77-289)||(13495989-13496202)
chr1 (46-289)||(10764921-10765165)
chr1 (46-289)||(13493264-13493508)
chr1 (191-289)||(32506000-32506098)
chr1 (145-246)||(8435280-8435380)
chr1 (77-282)||(15297340-15297542)
chr1 (145-236)||(23990235-23990325)
chr1 (121-277)||(21153269-21153424)
chr1 (212-289)||(27282274-27282351)
chr1 (200-289)||(22456648-22456736)
[»] chr6 (20 HSPs)
chr6 (77-289)||(19664696-19664909)
chr6 (145-289)||(16883677-16883820)
chr6 (77-281)||(15535066-15535270)
chr6 (46-289)||(13017189-13017433)
chr6 (77-287)||(15540574-15540784)
chr6 (77-289)||(32427303-32427514)
chr6 (46-289)||(14790620-14790864)
chr6 (149-289)||(20527266-20527407)
chr6 (46-289)||(22221726-22221967)
chr6 (46-289)||(22247561-22247802)
chr6 (46-289)||(14795648-14795892)
chr6 (171-289)||(30978338-30978455)
chr6 (213-289)||(27649104-27649180)
chr6 (191-289)||(32704400-32704498)
chr6 (212-289)||(1838475-1838552)
chr6 (145-246)||(11183937-11184037)
chr6 (200-289)||(12980648-12980736)
chr6 (77-155)||(1838610-1838690)
chr6 (200-289)||(12983535-12983623)
chr6 (45-161)||(27649231-27649347)
[»] chr3 (13 HSPs)
chr3 (46-289)||(22626312-22626554)
chr3 (46-289)||(11138570-11138812)
chr3 (46-277)||(39563510-39563742)
chr3 (212-289)||(13979488-13979565)
chr3 (224-282)||(46731503-46731561)
chr3 (77-181)||(46731563-46731669)
chr3 (106-274)||(35366392-35366559)
chr3 (97-181)||(20536387-20536472)
chr3 (145-246)||(50096825-50096925)
chr3 (77-160)||(13979616-13979700)
chr3 (46-161)||(19869226-19869343)
chr3 (130-274)||(47412199-47412342)
chr3 (92-161)||(46542571-46542641)
[»] scaffold0363 (2 HSPs)
scaffold0363 (46-289)||(11-251)
scaffold0363 (239-278)||(283-322)
[»] scaffold0440 (1 HSPs)
scaffold0440 (46-289)||(9865-10109)
[»] scaffold0264 (1 HSPs)
scaffold0264 (46-289)||(24185-24426)
[»] scaffold0352 (2 HSPs)
scaffold0352 (77-165)||(2649-2738)
scaffold0352 (236-289)||(2794-2847)
[»] scaffold0567 (1 HSPs)
scaffold0567 (230-289)||(5995-6054)
[»] scaffold0766 (1 HSPs)
scaffold0766 (55-163)||(3633-3739)
[»] scaffold0500 (1 HSPs)
scaffold0500 (226-274)||(2710-2758)
[»] scaffold0063 (1 HSPs)
scaffold0063 (226-274)||(7173-7221)


Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 10 - 290
Target Start/End: Original strand, 3861871 - 3862151
Alignment:
Q  10 acatcatcattaaaagaatagagatttgtatatatatgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaagga 109  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3861871 acatcatcattaaaagaatagagatttggatatatatgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacgagga 3861970  T
Q  110 ctgttattaacttctacttagcaatttcattatcaaaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgat 209  Q
     |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||    
T  3861971 ttgttattaacttctacttagcaatttcattattaaaaggatgtattaaattcaatgatgccctaggcagttcaattgattttttgtaacataaactgat 3862070  T
Q  210 taaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatgc 290  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||| |||||||| |||||||    
T  3862071 taaaaacaataaaagattggttttataaaattagagagaagtatgattaagaccttcgaatccttcgaagttctcctatgc 3862151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 145 - 289
Target Start/End: Original strand, 23313361 - 23313504
Alignment:
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattaga 244  Q
    |||||||||||||||||||| | || ||||||||||| | |||||||| ||||||||||||  |||||||||||||||||| ||||||||||||||||||    
T  23313361 aaaggatgtattaaattcaagggtgccctaggtagttgaattgatttt-tgtaacataaacgaattaaaaacaataaaagaatggttttagaaaattaga 23313459  T
Q  245 gagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||||||||||||||||||||||||| ||||||    
T  23313460 gagaagtatggttaagacctttgaatcctccgaagttctcctatg 23313504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 295106 - 294866
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcatta-tca 144  Q
    |||| ||||||||||||||| || | | ||||||||||||||||| ||||||| ||||| ||||||||  |||||||||||||||||||||||||| | |    
T  295106 tgatggatatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgtgtccacgaggactgtatttaacttctacttagcaatttcattattaa 295007  T
Q  145 aaaggatgtattaaatt--caatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaatta 242  Q
    |||||||||| ||||||   | ||||| || ||| |||  |||||   ||||||||||||| ||| |||||| |||  || ||||||||||||||||||     
T  295006 aaaggatgtaataaatttatattgatgcccgaggcagt--agttg---ttttgtaacataagctggttaaaagcaaataaggattggttttagaaaatt- 294913  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||||| | || |||||||||||||||| ||||||    
T  294912 gagagaagtatggttaagtctttcgaatcctccgaagttctcctatg 294866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 144 - 289
Target Start/End: Complemental strand, 23108133 - 23107989
Alignment:
Q  144 aaaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattag 243  Q
    ||||||||||||| ||||||| ||||||||||  |||| ||||||| ||| |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  23108133 aaaaggatgtatttaattcaaggatgtcctagacagttgagttgatgttt-gtaacataaacgaattaaaaacaataaaagattggttttagaaaattag 23108035  T
Q  244 agagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||| | ||||||||||||| ||||| ||||||| || ||||||    
T  23108034 agagaaatgtggttaagaccttcgaatcatccgaagctctcctatg 23107989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 38 - 289
Target Start/End: Original strand, 23759600 - 23759852
Alignment:
Q  38 tatatata-tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaattt 136  Q
    |||||||| |||||||||||||||||||| || | | ||||||||||||||||| | || || || || ||||||||  |||||||||||||||||| ||    
T  23759600 tatatatagtgatagatatttggcaagtgaaccaaattcaatcgaagtaataaaaagttcgtttctacgaggactgtatttaacttctacttagcaaatt 23759699  T
Q  137 cattatcaaaaggatgtattaaatt-caatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-- 233  Q
    |||| | |||||||||||| || ||  | || || |||||| |||| ||||||  ||| ||||||||||||||||||||||||||||  |||||||||      
T  23759700 cattttaaaaaggatgtataaatttatattggtgccctaggcagttgagttga--tttagtaacataaactgattaaaaacaataaagaattggttttta 23759797  T
Q  234 agaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||| | |||||||||||||||||| |||| ||||||||| ||| || ||||||    
T  23759798 agaaaa-tcgagagaagtatggttaagtccttcgaatcctccaaagctctcctatg 23759852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 52 - 282
Target Start/End: Complemental strand, 11279730 - 11279500
Alignment:
Q  52 atatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcatta-tcaaaagga 150  Q
    |||||||||||||| || | | ||||||||||||||||| ||||||| |||||||||||| |  |||| ||||||||||||||||||||| | |||||||    
T  11279730 atatttggcaagtgaaccaaattcaatcgaagtaataaa-aatttgtttccacaaggactatatttaatttctacttagcaatttcattattaaaaagga 11279632  T
Q  151 tgtattaaatt--caatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattgg-ttttagaaaattagagag 247  Q
    ||||| |||||   | || || |||||| |||| ||||||  |||||||||||||||||||||||||| |  ||||||||| |||||||| ||| |||||    
T  11279631 tgtataaaatttatattggtgccctaggcagttgagttga--ttttgtaacataaactgattaaaaacgaataaagattggtttttagaagatt-gagag 11279535  T
Q  248 aagtatggttaagacctttgaatcctccgaagttc 282  Q
    ||||||||||||| |||| ||||| | ||||||||    
T  11279534 aagtatggttaagtccttcgaatctttcgaagttc 11279500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 54 - 282
Target Start/End: Original strand, 46846320 - 46846549
Alignment:
Q  54 atttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-ggatg 152  Q
    |||||||||||| |  ||| ||||||||||||||||| ||| ||| ||||| ||||||||  |||| |||||||||||||||||||||| |||| |||||    
T  46846320 atttggcaagtgaatcagattcaatcgaagtaataaa-aatatgtttccacgaggactgtatttaatttctacttagcaatttcattattaaaaaggatg 46846418  T
Q  153 tattaaattcaa--tgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaa-acaataaaagattgg-ttttagaaaattagagaga 248  Q
    ||| ||||| |   || || |||||| |||| |||||| || || | |  |||||||| ||||| ||||||||||||||| |||||||||||| ||||||    
T  46846419 tataaaatttatattggtgccctaggcagttgagttgaattcttatta--taaactgactaaaaaacaataaaagattggtttttagaaaatt-gagaga 46846515  T
Q  249 agtatggttaagacctttgaatcctccgaagttc 282  Q
    |||||||||||| |||| ||||||||||||||||    
T  46846516 agtatggttaagtccttcgaatcctccgaagttc 46846549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 36222309 - 36222552
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    |||| |||||||||||| || || | | ||||| ||||||||||| |||| ||  |||| |||| |||  |||| |||||| ||||||||||||||| ||    
T  36222309 tgatggatatttggcaaatgaaccaaattcaattgaagtaataaa-aattcgttaccacgaggattgtatttaatttctacgtagcaatttcattattaa 36222407  T
Q  146 aa-ggatgtattaaattcaa--tgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaatt 241  Q
    || |||||||| ||||| |   || || |||||| |||| |||||||||| |  ||||||||||||||||||||||  ||||||||||||| |||| |||    
T  36222408 aaaggatgtataaaatttatattggtgccctaggcagttgagttgattttct--aacataaactgattaaaaacaaagaaagattggtttttagaagatt 36222505  T
Q  242 agagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
     |||||||||||||||||| |||| |||||||||||||||| ||||||    
T  36222506 -gagagaagtatggttaagtccttcgaatcctccgaagttctcctatg 36222552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 45 - 289
Target Start/End: Complemental strand, 33313240 - 33312996
Alignment:
Q  45 atgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||  ||||| |  | | ||||||||||||||||| |||| || || || |||||||| |||||||||||||||||||||||||||| |    
T  33313240 atgatagatatttgagaagtgaaacaaattcaatcgaagtaataaa-aattcgtttctacgaggactgt-attaacttctacttagcaatttcattatta 33313143  T
Q  145 aaa-ggatgtattaaattcaa--tgatgtcctaggtagttcagttgattttttgtaacataaactga-ttaaaaacaataaaagattggttttagaaaat 240  Q
    ||| |||||| | ||||| |   || || |||||| |||| ||||||||||  ||||||||||| || ||||||| |||||| |||||||||||||||||    
T  33313142 aaaaggatgtgtaaaatttatattggtgccctaggcagttgagttgatttt--gtaacataaacggaattaaaaataataaaggattggttttagaaaat 33313045  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
      |||||||  ||||||||| |||| |||||||| |||| || ||||||    
T  33313044 ctgagagaaaaatggttaagtccttcgaatcctctgaagctctcctatg 33312996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 282
Target Start/End: Complemental strand, 24783624 - 24783417
Alignment:
Q  77 atcgaagtaataaataa-tttgtatccacaaggactgttattaacttctacttagcaatttcatt-atcaaaa-ggatgtattaaattcaat-gat-gtc 171  Q
    ||||||||||||||||| ||||||||||| ||||| ||| |||| |||||||  |||||||| || ||||||| |||||||| || ||  || ||| |||    
T  24783624 atcgaagtaataaataaatttgtatccacgaggaccgttgttaatttctactcggcaatttcttttatcaaaaaggatgtataaatttatattgattgtc 24783525  T
Q  172 ctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacctttgaat 270  Q
    | ||| |||| |||||   |||||||||||||||| |   ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||    
T  24783524 caaggcagttgagttg---ttttgtaacataaacttaaataaaacaataaaag-ttggttttaagaatattagagagaagtatggttaagacctttgaat 24783429  T
Q  271 cctccgaagttc 282  Q
    ||||||||||||    
T  24783428 cctccgaagttc 24783417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 289
Target Start/End: Original strand, 36842967 - 36843181
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatcaaaaggatgtattaaattcaatgatgt--cct 173  Q
    |||||||||||||||||  | | |||||||||||| ||| |||| ||||||| ||||||||| ||||| |||||||||||||||||||||| | |  |||    
T  36842967 atcgaagtaataaataagatcgaatccacaaggaccgttgttaatttctactcagcaatttcgttatcgaaaggatgtattaaattcaatggtttgccct 36843066  T
Q  174 aggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacctttgaatcc 272  Q
    ||| ||||   ||| |||||  |||  |||||  |   ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||    
T  36843067 aggcagttggattggttttta-taaagtaaacgtaaataaaacaataaaag-ttggttttatgaatattagagagaagtatggttaagaccttcgaatcc 36843164  T
Q  273 tccgaagttcacctatg 289  Q
    |||||||||| ||||||    
T  36843165 tccgaagttctcctatg 36843181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 6967393 - 6967149
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||||||||||| | |  | ||||||||| |||  || || |||||||| ||||| ||| |||| |||||||  |||||||| ||||||    
T  6967393 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 6967294  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| |||| |||||   |||||||||||||||  |   ||||||||||||| |||||||| |||| ||    
T  6967293 aaaaggatgtataaatttatattgattgccctaggcagttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatat 6967198  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  6967197 tagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 6967149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 17866353 - 17866597
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||||||||||| | |  | ||||||||| |||  || || |||||||| ||||| ||| |||| |||||||  |||||||| ||||||    
T  17866353 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 17866452  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| |||| || ||   |||||||||||||||  |   ||||||||||||| |||||||| |||| ||    
T  17866453 aaaaggatgtataaatttatattgattgccctaggcagttgagctg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatat 17866548  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||| ||||||| |||||||| ||||||| ||||||    
T  17866549 tagagagaagtatggtttagaccttcgaatcctctgaagttctcctatg 17866597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 289
Target Start/End: Original strand, 17863240 - 17863338
Alignment:
Q  191 ttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||  |   ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  17863240 ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 17863338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 9765880 - 9765803
Alignment:
Q  212 aaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||| |||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  9765880 aaaataataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 9765803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 153; Significance: 4e-81; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 46 - 281
Target Start/End: Original strand, 12575300 - 12575535
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    ||||| ||||||||||||||||| | | |||||||||||||||||||||| |||||||| ||||||||| |||||||||||| | ||| |||||||| ||    
T  12575300 tgataaatatttggcaagtgtaccaaattcaatcgaagtaataaataattcgtatccacgaggactgttgttaacttctactcaacaagttcattattaa 12575399  T
Q  146 aa-ggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattaga 244  Q
    || ||||||||||||||||||| || |||||| |||| |||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  12575400 aaaggatgtattaaattcaatggtgccctaggcagttgagttgatttt-tgtaacataaattgattaaaaacaataaaagattggttttagaaaattaga 12575498  T
Q  245 gagaagtatggttaagacctttgaatcctccgaagtt 281  Q
    ||||||||||||||||||| |||||||||||||||||    
T  12575499 gagaagtatggttaagaccattgaatcctccgaagtt 12575535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 14418707 - 14418467
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    |||||||| ||||||||||| || | || | ||||||||| ||||||||| || ||||| ||||| ||| |||||| | ||||||||||||| |||||||    
T  14418707 tgatagatttttggcaagtgaaccaaag-ctatcgaagtagtaaataattcgt-tccacgaggaccgttgttaactacaacttagcaatttctttatcaa 14418610  T
Q  146 aa-ggatgtattaaattcaatgat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttta-gaaaatta 242  Q
    || |||| | |||||||||||| | | |||||| |||| ||||| |||||   |||||||||  ||||||||||||||||| ||||||||| ||| ||||    
T  14418609 aaaggatatgttaaattcaatggttgccctaggcagttgagttggttttt---aacataaacaaattaaaaacaataaaag-ttggttttaagaatatta 14418514  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||||||| || |||||||||||| ||| ||||||    
T  14418513 gagagaagtatggttaagacattcgaatcctccgaatttctcctatg 14418467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 149 - 292
Target Start/End: Original strand, 41778847 - 41778988
Alignment:
Q  149 gatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagaga 248  Q
    |||||||||||||||| | || |||||| |||| | ||||||||| |||||||||||  ||||||||||||||||||||| ||| |||| |||| |||||    
T  41778847 gatgtattaaattcaagggtgccctaggcagttgaattgattttt-gtaacataaacgaattaaaaacaataaaagattgattt-agaagattaaagaga 41778944  T
Q  249 agtatggttaagacctttgaatcctccgaagttcacctatgcta 292  Q
    |||||||||||||||||  |||| |||||||||| |||||||||    
T  41778945 agtatggttaagaccttcaaatcttccgaagttctcctatgcta 41778988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 211 - 281
Target Start/End: Complemental strand, 13097100 - 13097030
Alignment:
Q  211 aaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctccgaagtt 281  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13097100 aaaaacaataaaagattagttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaagtt 13097030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 225 - 279
Target Start/End: Complemental strand, 44008361 - 44008307
Alignment:
Q  225 attggttttagaaaattagagagaagtatggttaagacctttgaatcctccgaag 279  Q
    |||||||||||||||||||| |||| |||||||| |||||| |||||||||||||    
T  44008361 attggttttagaaaattagaaagaattatggttatgaccttcgaatcctccgaag 44008307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 41836294 - 41836394
Alignment:
Q  146 aaggatgtattaaattcaatgatgt--cctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattag 243  Q
    |||||||||| |||||||||| |||  |||||| |||| |||||| |||| |||| ||||||  | ||||||||||||||| |||||||||||||||| |    
T  41836294 aaggatgtataaaattcaatggtgtgccctaggcagttgagttgactttt-gtaatataaacgaaataaaaacaataaaag-ttggttttagaaaatttg 41836391  T
Q  244 aga 246  Q
    |||    
T  41836392 aga 41836394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 41836415 - 41836466
Alignment:
Q  238 aattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||| |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  41836415 aatttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 41836466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 14418435 - 14418396
Alignment:
Q  239 attagagagaagtatggttaagacctttgaatcctccgaa 278  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  14418435 attagagagaagtatggttaagacattcgaatcctccgaa 14418396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 46 - 282
Target Start/End: Complemental strand, 2542128 - 2541893
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcatta-tca 144  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||| |||||||| ||||||||  |||||||||||| ||||||||||||| | |    
T  2542128 tgatagatatttggcaagtgtaccaaagtcaatcgaagtaataaataattcgtatccacgaggactgtatttaacttctactgagcaatttcattattaa 2542029  T
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattgg-ttttagaaaattag 243  Q
    |||||||||||||||||||||| || |||||| |||| |||| | || ||||||||||||| ||||||||||||||||| || || |||| ||||||||     
T  2542028 aaaggatgtattaaattcaatggtgccctaggcagttgagttta-ttcttgtaacataaacggattaaaaacaataaaatataggttttttgaaaattaa 2541930  T
Q  244 agagaagtatggttaagacctttgaatcctccgaagttc 282  Q
    ||||  |||||||||||||||| |||||||| |||||||    
T  2541929 agag--gtatggttaagaccttcgaatcctctgaagttc 2541893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 77 - 289
Target Start/End: Original strand, 26062720 - 26062937
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggact--gttattaacttctacttagcaatttcattatcaaaa-ggatgtattaaattcaatgatgtcc 172  Q
    |||||| |||||||||| || |||||||| |||||   ||| |||||||||||| | ||||||| ||||||||| ||||||||||||||||| | || ||    
T  26062720 atcgaaataataaataaattcgtatccacgaggaccccgttgttaacttctactcaacaatttctttatcaaaaaggatgtattaaattcaaggttgccc 26062819  T
Q  173 taggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaatt--agagagaagtatggttaagacctttgaat 270  Q
    |||||||||   |||  | ||||||| |||||| |||||||||||||||||| ||||||||||||||||  ||||||| |||||||||||||||||||||    
T  26062820 taggtagttggattg-gtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagagagagatgtatggttaagacctttgaat 26062918  T
Q  271 cctccgaagttcacctatg 289  Q
    |||||||||||| ||||||    
T  26062919 cctccgaagttctcctatg 26062937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 46 - 222
Target Start/End: Complemental strand, 12172218 - 12172041
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcatta-tc 143  Q
    |||||||||||||||||||| || | | || |||||||||||||| ||  | || ||||| ||||||||  |||||||||||||||||||||||||| |     
T  12172218 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaagatcgtttccacgaggactgtatttaacttctacttagcaatttcattatta 12172119  T
Q  144 aaaaggatgtattaaatt-caatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaa 222  Q
    |||||||||||| || ||  | || || |||||| |||| ||||||  ||| ||||||||||||||||||||||||||||    
T  12172118 aaaaggatgtataaatttatattggtgccctaggcagttgagttga--tttagtaacataaactgattaaaaacaataaa 12172041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 647203 - 647447
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataa-tttgtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||| ||||||||||||||||| | |  | ||||||||| |||  || ||||||||||| ||||| ||| |||| |||||||  |||||||| ||||||    
T  647203 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 647302  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| | || |||||   |||||||||||||||  |   ||||||||||||| |||||||| |||| ||    
T  647303 aaaaggatgtataaatttatattgattgccctaggcatttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatat 647398  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||| ||| |||||||| ||||||| ||||||    
T  647399 tagagagaagtatggttaagatcttcgaatcctctgaagttctcctatg 647447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 650475 - 650719
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataa-tttgtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||| ||||||||||||||||| | |  | ||||||||| |||  || ||||||||||| ||||| ||| |||| |||||||  ||||||||  |||||    
T  650475 tgataaatatttggcaagtgtaccaaaagctatcgaagtagtaataaagtttgtatccacgaggaccgttgttaatttctactcggcaatttctatatca 650574  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| | || |||||   |||||||||||||||  |   ||||||||||||| |||||||| | || ||    
T  650575 aaaaggatgtataaatttatattgattgccctaggcatttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcataatat 650670  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  650671 tagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 650719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 246
Target Start/End: Original strand, 11649305 - 11649405
Alignment:
Q  146 aaggatgtattaaattcaatgatgt--cctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattag 243  Q
    |||||||||| |||||||||| |||  |||||| |||| |||||| |||| |||| ||||||  | ||||||||||||||| |||||||||||||||| |    
T  11649305 aaggatgtataaaattcaatggtgtgccctaggcagttgagttgactttt-gtaatataaacgaaataaaaacaataaaag-ttggttttagaaaatttg 11649402  T
Q  244 aga 246  Q
    |||    
T  11649403 aga 11649405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 238 - 289
Target Start/End: Original strand, 11649426 - 11649477
Alignment:
Q  238 aattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||| |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  11649426 aatttgagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 11649477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 243 - 289
Target Start/End: Complemental strand, 26060635 - 26060589
Alignment:
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||| |||||||||||||| |||||||||||||||| ||||||    
T  26060635 gagagaagcatggttaagaccttcgaatcctccgaagttctcctatg 26060589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 249
Target Start/End: Complemental strand, 26060752 - 26060653
Alignment:
Q  150 atgtattaaattcaatgatgt--cctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagag 247  Q
    |||||| |||||||||| |||  |||||| || | ||||||||||| |||| |||||   | ||||||||||||||| |||||||||||||||| |||||    
T  26060752 atgtataaaattcaatggtgtgccctaggcaggtgagttgattttt-gtaatataaatgaaataaaaacaataaaag-ttggttttagaaaatttgagag 26060655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 7e-52; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 45 - 282
Target Start/End: Complemental strand, 36327172 - 36326935
Alignment:
Q  45 atgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatc 143  Q
    ||||||||||||||||||||| || | |  | ||||||||||||||||| || |||||||| ||||| ||| ||||||||||||  |||||||| |||||    
T  36327172 atgatagatatttggcaagtgaaccaaaa-ctatcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactctgcaatttctttatc 36327074  T
Q  144 -aaaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaatta 242  Q
     |||| |||||||||||||||| | || |||||| |||| || |   | ||||||| |||||| |||||||||||||||||| |||||||||||||||||    
T  36327073 aaaaaagatgtattaaattcaaagttgccctaggaagtt-agattggtatttgtaaaataaacggattaaaaacaataaaagtttggttttagaaaatta 36326975  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttc 282  Q
    |||||| |||||||||||||||||||||||||||||||||    
T  36326974 gagagatgtatggttaagacctttgaatcctccgaagttc 36326935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 289
Target Start/End: Original strand, 23673375 - 23673588
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-ggatgtattaaattcaatgatgtccta 174  Q
    ||||||||||||||||| || |||||||| ||||| ||| |||| ||||||| | ||||||| ||||||||| ||||||||||||||||| | || ||||    
T  23673375 atcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcaacaatttctttatcaaaaaggatgtattaaattcaaggttgcccta 23673474  T
Q  175 ggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctc 274  Q
    || ||||   |||   ||| |||| |||||| |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  23673475 ggcagttggattggcattt-gtaaaataaacggattaaaaacaataaaagtttggttttagaaaattagagagatgtatggttaagaccttcgaatcctc 23673573  T
Q  275 cgaagttcacctatg 289  Q
    |||||||| ||||||    
T  23673574 cgaagttctcctatg 23673588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 46 - 274
Target Start/End: Complemental strand, 31528635 - 31528406
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcatta-tca 144  Q
    |||||||||||||||||||| || | | || |||||||||||||| ||||||| ||||| ||||||||  |||||||||||||||||||||||||| | |    
T  31528635 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 31528536  T
Q  145 aaaggatgtattaaatt-caatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt--agaaaatt 241  Q
    ||||||||||| || ||  | || || |||||| |||| ||||||  ||| ||||||||||||||||||||||||||||  |||||||||  ||||||||    
T  31528535 aaaggatgtataaatttatattggtgccctaggcagttgagttga--tttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt 31528438  T
Q  242 agagagaagtatggttaagacctttgaatcctc 274  Q
     |||||||||||||||||| |||| ||||||||    
T  31528437 -gagagaagtatggttaagtccttcgaatcctc 31528406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 46 - 265
Target Start/End: Complemental strand, 13710315 - 13710097
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    |||||||||||||||||||| || | | ||||||||||||||||| |||| || |  || || |||||  ||||||||||||||||||||||||||| ||    
T  13710315 tgatagatatttggcaagtgaaccaaattcaatcgaagtaataaa-aattcgtttttacgagaactgtatttaacttctacttagcaatttcattattaa 13710217  T
Q  146 aa-ggatgtattaaattcaa--tgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaatta 242  Q
    || |||||||| ||||| |   ||||| |  ||| |||| |||||| ||   ||||||||||| |||||||||||||||||||||||||||||||||||     
T  13710216 aaaggatgtataaaatttatattgatgcctgaggaagttgagttgagtt---gtaacataaacggattaaaaacaataaaagattggttttagaaaattt 13710120  T
Q  243 gagagaagtatggttaagacctt 265  Q
    |||||||||||||||||||||||    
T  13710119 gagagaagtatggttaagacctt 13710097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 52 - 278
Target Start/End: Complemental strand, 40018218 - 40017992
Alignment:
Q  52 atatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-gga 150  Q
    |||||||||||||| || | | ||||||||||||||||| ||||||| | |||||||| ||   |||||||| |||| |||||||  |||| |||| |||    
T  40018218 atatttggcaagtgaaccaaattcaatcgaagtaataaaaaatttgttttcacaaggagtgcatttaacttcgacttggcaatttttttattaaaaagga 40018119  T
Q  151 tgtattaaattcaa--tgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagaga 248  Q
    ||||| ||||| |   ||||| |||||| |||| |||||||||   ||||||||||| ||||||||||||||| ||| |||||| |||||| | ||||||    
T  40018118 tgtataaaatttatattgatgccctaggcagttgagttgattt---gtaacataaacggattaaaaacaataagagactggtttaagaaaaattgagaga 40018022  T
Q  249 agtatggttaagacctttgaatcctccgaa 278  Q
    ||||||||||||||||| ||||||||||||    
T  40018021 agtatggttaagaccttcgaatcctccgaa 40017992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 99 - 289
Target Start/End: Complemental strand, 16295090 - 16294900
Alignment:
Q  99 atccacaaggactgttattaacttctacttagcaatttcattatcaaaaggatgtattaaattcaa--tgatgtcctaggtagttcagttgattttttgt 196  Q
    |||||| ||||| ||| |||| ||||||| ||||||||| ||||| ||||||||||| ||||| |   ||||| |||||| |||| ||||||||||  ||    
T  16295090 atccacgaggaccgttgttaatttctactcagcaatttcgttatcgaaaggatgtataaaatttatattgatgccctaggcagttgagttgatttt--gt 16294993  T
Q  197 aacataaactgattaaaaacaataaaagattggtttt-agaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    | ||||||| ||||||||||||  ||||||| ||||| |||||||| |||||||||||||||||| |||| |||||||||||||||| ||||||    
T  16294992 atcataaaccgattaaaaacaaataaagattagttttcagaaaatt-gagagaagtatggttaagtccttcgaatcctccgaagttctcctatg 16294900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 74 - 289
Target Start/End: Complemental strand, 31626766 - 31626551
Alignment:
Q  74 tcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-ggatgtattaaattcaa--tgatgt 170  Q
    ||||||||||||||||| |||| || || |  |||||||| |||||||||||||||||||||||||||| |||| |||||| | ||||| |   || ||     
T  31626766 tcaatcgaagtaataaa-aattcgtttcaatgaggactgt-attaacttctacttagcaatttcattattaaaaaggatgtgtaaaatttatattggtgc 31626669  T
Q  171 cctaggtagttcagttgattttttgtaacataaactga-ttaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaa 269  Q
    |||||| |||| ||||||||||  ||||||||||  || ||||||| |||||| |||||||||||||||||  |||||||| ||||||||| | || |||    
T  31626668 cctaggcagttgagttgatttt--gtaacataaaaggaattaaaaataataaaggattggttttagaaaatctgagagaagaatggttaagtcattcgaa 31626571  T
Q  270 tcctccgaagttcacctatg 289  Q
    |||||||||| || ||||||    
T  31626570 tcctccgaagctctcctatg 31626551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 32575685 - 32575930
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    |||||||||||||||||||| || | |  | || |||||||||||||| || |||||||| ||||| ||| |||||||||||| | | ||||| |||| |    
T  32575685 tgatagatatttggcaagtgaacca-acactattgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactcaacgatttcgttataa 32575783  T
Q  145 -aaaggatgtattaaattcaat-gatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttta-gaaaatt 241  Q
     ||| ||||||||||||||||| | |  |||||| ||||   |||  ||||| |||  |||||  |   ||||||||||||| ||||||||| ||| |||    
T  32575784 taaatgatgtattaaattcaattgttaccctaggcagttggattg--tttttataaagtaaacgtaaataaaacaataaaag-ttggttttaagaatatt 32575880  T
Q  242 agaga--gaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||  ||||||||||||||||||| ||||||||||||| || ||||||    
T  32575881 agagaaagaagtatggttaagaccttcgaatcctccgaagctctcctatg 32575930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 48 - 288
Target Start/End: Original strand, 11988864 - 11989108
Alignment:
Q  48 atagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttc--tacttagcaatttcatta-tca 144  Q
    ||||||||||| |||||| |  | | |||||||||||||||||||||| || ||||| || || ||| ||||||||  |||||||||||||||||| | |    
T  11988864 atagatatttgacaagtgaatcaaattcaatcgaagtaataaataattcgtttccacgagaaccgttcttaacttctatacttagcaatttcattagtaa 11988963  T
Q  145 aaagga--tgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaatta 242  Q
     |||||  | |||||||||||||| |  |||||| |||| |||||| |||||||||||||||| |||||||||| ||||||||||| |||||||||||||    
T  11988964 taaggacgtatattaaattcaatggtcccctaggcagttgagttga-tttttgtaacataaacagattaaaaacgataaaagattgattttagaaaatta 11989062  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctat 288  Q
    |||||||||| |||||||||||| ||||||||| |||||| |||||    
T  11989063 gagagaagtaaggttaagaccttcgaatcctccaaagttctcctat 11989108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 274
Target Start/End: Original strand, 15532200 - 15532429
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcatta-tca 144  Q
    |||||||||||||||| ||| || | | || |||||||||||||| |||| || ||||| ||||||||  |||||||||||||||||||||||||| | |    
T  15532200 tgatagatatttggcatgtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 15532299  T
Q  145 aaaggatgtattaaatt-caatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt--agaaaatt 241  Q
    ||||||||||| || ||  | || || |||||| |||| ||||||  ||| ||||||||||||||||||||||||||||  |||||||||  ||||||||    
T  15532300 aaaggatgtataaatttatattggtgccctaggcagttgagttga--tttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt 15532397  T
Q  242 agagagaagtatggttaagacctttgaatcctc 274  Q
     |||||||||||||||||| |||| ||||||||    
T  15532398 -gagagaagtatggttaagtccttcgaatcctc 15532429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 274
Target Start/End: Original strand, 15542384 - 15542611
Alignment:
Q  48 atagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcatta-tcaaa 146  Q
    |||||||||||||||||| || | | || |||||||||||||| |||| || ||||| ||||||||  |||||||||||||| ||||||||||| | |||    
T  15542384 atagatatttggcaagtgaaccaaattcgatcgaagtaataaaaaattcgtttccacgaggactgtatttaacttctacttaacaatttcattattaaaa 15542483  T
Q  147 aggatgtattaaatt-caatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt--agaaaattag 243  Q
    ||||||||| || ||  | || || |||||| |||| ||||||  ||| ||||||||||||||||||||||||||||  |||||||||  |||||||| |    
T  15542484 aggatgtataaatttatattggtgccctaggcagttgagttga--tttagtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-g 15542580  T
Q  244 agagaagtatggttaagacctttgaatcctc 274  Q
    ||||||||||||||||| |||| ||||||||    
T  15542581 agagaagtatggttaagtccttcgaatcctc 15542611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 49 - 289
Target Start/End: Complemental strand, 33575331 - 33575091
Alignment:
Q  49 tagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa- 147  Q
    |||| |||||||||||| || | | ||||||||||||||||| |||| || | ||| ||||||||  |||||||||| |||||||||| ||||| ||||     
T  33575331 tagaaatttggcaagtgaaccaaattcaatcgaagtaataaaaaattcgttttcacgaggactgtatttaacttctatttagcaattttattattaaaaa 33575232  T
Q  148 ggatgtattaaattcaat-gatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaattagag 245  Q
    |||||||| || ||  || | || |||||| |||| |||||||||   ||||||||||||||||||||||||||||  ||||||||| |||||||| |||    
T  33575231 ggatgtataaatttatattggtgccctaggcagttgagttgattta--gtaacataaactgattaaaaacaataaagaattggtttttagaaaatt-gag 33575135  T
Q  246 agaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||| |||| ||||||||||||| || ||||||    
T  33575134 agaagtatggttaagtccttcgaatcctccgaagctctcctatg 33575091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 45 - 289
Target Start/End: Complemental strand, 22159993 - 22159746
Alignment:
Q  45 atgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatc- 143  Q
    |||||||||||||| ||||||||| | | || |||||||||||||| ||||||| ||||| ||||||||  |||||||||||||||||||||| || ||     
T  22159993 atgatagatatttgacaagtgtaccaaattcgatcgaagtaataaaaaatttgtttccacgaggactgtatttaacttctacttagcaatttctttgtca 22159894  T
Q  144 aaaaggatg--tattaaattc-aatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaa 239  Q
    |||||||||  |||||||||| || | || |||||| ||||   |||  ||||| |||  |||||  |   |||||||||||| ||||||||| |||| |    
T  22159893 aaaaggatgtatattaaattcaaaggttgccctaggcagttggattg-gtttttataaagtaaacgtaaataaaacaataaaa-attggttttaagaata 22159796  T
Q  240 ttagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  22159795 ttagagagaaatatggttaagacctttgaatcctccgaagttctcctatg 22159746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 77 - 289
Target Start/End: Original strand, 14616459 - 14616672
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-ggatgtattaaattcaat-gatgtcc- 172  Q
    ||||||||||||||||| || |||||||| ||||| ||| |||| |||||||  |||||||| ||||||||| |||||||| || ||  || |||  ||     
T  14616459 atcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaaggatgtatgaatttatattgattaccc 14616558  T
Q  173 taggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaattagagagaagtatggttaagacctttgaatc 271  Q
    |||| |||| |||||   |||||||||||||||  |   ||||||||||||| ||| |||| |||| |||||||||||||||||||||||||||||||||    
T  14616559 taggaagttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttgattttaagaatattagagagaagtatggttaagacctttgaatc 14616654  T
Q  272 ctccgaagttcacctatg 289  Q
    ||||||||||| ||||||    
T  14616655 ctccgaagttctcctatg 14616672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 26711464 - 26711564
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    |||||||||||||||||||| || | | ||||| ||||||||||| |||| || ||||| |||||||| |||||||||||||||||||||||||||||||    
T  26711464 tgatagatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgt-attaacttctacttagcaatttcattatcaa 26711562  T
Q  146 aa 147  Q
    ||    
T  26711563 aa 26711564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 46 - 147
Target Start/End: Original strand, 26981201 - 26981301
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    |||||||||||||||||||| || | | ||||| ||||||||||| |||| || ||||| |||||||| |||||||||||||||||||||||||||||||    
T  26981201 tgatagatatttggcaagtgaaccaaattcaattgaagtaataaaaaattcgtttccacgaggactgt-attaacttctacttagcaatttcattatcaa 26981299  T
Q  146 aa 147  Q
    ||    
T  26981300 aa 26981301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 34406094 - 34405850
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||||||||||| | |  | ||||||||| |||  || || |||||||||||||| ||| |||| |||||||  |||||||| ||||||    
T  34406094 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacaaggaccgttgttaatttctactcggcaatttctttatca 34405995  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| |||| |||||   || ||||||||||||  |   ||||||||||||| |||||||| |||| ||    
T  34405994 aaaaggatgtataaatttatattgattgccctaggcagttgagttg---ttgtgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatat 34405899  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||||||||||||  ||||||| ||||||| ||||||    
T  34405898 tagagagaagtatggttaagaccttcaaatcctctgaagttctcctatg 34405850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 282
Target Start/End: Original strand, 7649972 - 7650178
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-ggatgtattaaattcaat-gat-gtcc 172  Q
    ||||||||||||||||| || |||| ||| ||||| ||| |||| ||||||| | ||||||| ||||||||| |||||||| || ||  || ||| | ||    
T  7649972 atcgaagtaataaataaattcgtattcacgaggaccgttgttaatttctactcaacaatttctttatcaaaaaggatgtataaatttatattgattgccc 7650071  T
Q  173 taggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaattagagagaagtatggttaagacctttgaatc 271  Q
    |||| |||| |||||   |||||||||||||||  |   ||||||||||||| ||| |||| |||| |||||||||||||||||||||||| ||||||||    
T  7650072 taggcagttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttgcttttaagaatattagagagaagtatggttaagacatttgaatc 7650167  T
Q  272 ctccgaagttc 282  Q
    || ||||||||    
T  7650168 ctacgaagttc 7650178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 26712487 - 26712574
Alignment:
Q  191 ttttgtaacataaactga-ttaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctccga 277  Q
    |||||||||||||||  | ||||||| | ||||||||||||||||||||||  |||||||| ||||||||| | || |||||||||||    
T  26712487 ttttgtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatctgagagaagaatggttaagtctttcgaatcctccga 26712574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 191 - 277
Target Start/End: Original strand, 26982225 - 26982312
Alignment:
Q  191 ttttgtaacataaactga-ttaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctccga 277  Q
    |||||||||||||||  | ||||||| | ||||||||||||||||||||||  |||||||| ||||||||| | || |||||||||||    
T  26982225 ttttgtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatctgagagaagaatggttaagtctttcgaatcctccga 26982312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 100; Significance: 2e-49; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 47 - 289
Target Start/End: Complemental strand, 1936873 - 1936628
Alignment:
Q  47 gatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa- 145  Q
    ||||||||||||||||||| || | | |||||||||||||| |||||||  | ||||||| |||  || ||||||||||||| ||||||||||||  ||     
T  1936873 gatagatatttggcaagtgaaccaaattcaatcgaagtaatgaataattcatttccacaatgaccattgttaacttctacttggcaatttcattagtaat 1936774  T
Q  146 aaggatgtattaaattcaatga--tgtcctaggtagttcagttgattttttgtaacataaactga-ttaaaaacaataaaagattggttttagaaaatta 242  Q
    || ||||||||||||||||||   || |||||| |||| |||||||| || ||| |||||||||| ||||||||  |||||  |||||||||||||||||    
T  1936773 aacgatgtattaaattcaatgggttgacctaggcagttgagttgattgtt-gtatcataaactgaattaaaaacggtaaaattttggttttagaaaatta 1936675  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||    
T  1936674 gagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1936628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 145 - 289
Target Start/End: Complemental strand, 34066489 - 34066346
Alignment:
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattaga 244  Q
    |||||||||||||||||||| | || |||||| |||| | ||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  34066489 aaaggatgtattaaattcaagggtgccctaggcagttgaattgattttt-gtaacataaacgaattaaaaacaataaaagattggttttagaaaattaga 34066391  T
Q  245 gagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  34066390 gagaagtatggttaagaccttcgaatcctccgaagttctcctatg 34066346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 145 - 289
Target Start/End: Original strand, 16190279 - 16190421
Alignment:
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattaga 244  Q
    |||||||||||||||||||||| || |||||| | || ||||||| ||| |||||||||||  ||||||||||||||| ||||||||||||||||||| |    
T  16190279 aaaggatgtattaaattcaatggtgccctaggaaattgagttgatgttt-gtaacataaacgaattaaaaacaataaa-gattggttttagaaaattaaa 16190376  T
Q  245 gagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  16190377 gagaagtatggttaagaccttcgaatcctccgaagttctcctatg 16190421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 116 - 282
Target Start/End: Complemental strand, 39546417 - 39546251
Alignment:
Q  116 ttaacttctacttagcaatttcattatcaaaaggatgtattaaattcaat-gatgtcctaggtagttcagttgattttttgtaacataaactgattaaaa 214  Q
    ||||||| |||| ||||||||||||||| ||||||||||||||||||||| | || |||||| ||||   ||| ||||| ||||| |||||  |   |||    
T  39546417 ttaacttttactcagcaatttcattatcgaaaggatgtattaaattcaattgttgccctaggcagttggattggttttt-gtaacgtaaacgcaaataaa 39546319  T
Q  215 acaataaaagattggttttagaaa-attagagagaagtatggttaagacctttgaatcctccgaagttc 282  Q
    |||||||||| ||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||    
T  39546318 acaataaaag-ttggttttaaaaatattagagagaagtatggttaagaccttcgaatcctccgaagttc 39546251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 77 - 289
Target Start/End: Complemental strand, 13496202 - 13495989
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-ggatgtattaaattcaat-gat-gtcc 172  Q
    ||||||||||||||||| || |||||||| ||||| ||| |||| |||||||  |||||||| ||||||||| |||||||| || ||  || ||| ||||    
T  13496202 atcgaagtaataaataaattcgtatccacgaggaccgttgttaatttctactcggcaatttctttatcaaaaaggatgtataaatttatattgattgtcc 13496103  T
Q  173 taggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacctttgaatc 271  Q
    |||| |||| | |||   |||||||||||||||  |   ||||||||||||| ||| ||||| ||| |||||||||||||||||||||||||||||||||    
T  13496102 taggcagttgaattg---ttttgtaacataaacgtaaataaaacaataaaag-ttgattttaagaatattagagagaagtatggttaagacctttgaatc 13496007  T
Q  272 ctccgaagttcacctatg 289  Q
    ||||||||||| ||||||    
T  13496006 ctccgaagttctcctatg 13495989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 10765165 - 10764921
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||||||||||| | |  | ||||||||| |||  || || |||||||| ||||| ||| |||| |||||||  |||||||| ||||||    
T  10765165 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 10765066  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| |||| |||||   |||||||||||||||  |   ||||||||||||| |||||||| |||| ||    
T  10765065 aaaaggatgtataaatttatattgattgccctaggcagttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatat 10764970  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  10764969 tagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 10764921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 13493508 - 13493264
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||||||||||| | |  | ||||||||| |||  || || |||||||| ||||| ||| |||| |||||||  |||||||| ||||||    
T  13493508 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 13493409  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| |||| |||||   |||||||||||||||  |   ||||||||||||| |||||||| |||| ||    
T  13493408 aaaaggatgtataaatttatattgattgccctaggcagttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatat 13493313  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  13493312 tagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 13493264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 191 - 289
Target Start/End: Original strand, 32506000 - 32506098
Alignment:
Q  191 ttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||| ||||||||||  ||||||||||||||||| |||||||| |||| |||| |||||||| ||||||||||||| |||||||||||||||| ||||||    
T  32506000 ttttctaacataaacgaattaaaaacaataaaag-ttggttttaagaatattatagagaagtgtggttaagaccttcgaatcctccgaagttctcctatg 32506098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 8435380 - 8435280
Alignment:
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattaga 244  Q
    ||||||||||||||||||||   || |||||| |||| ||||||||||| |||||||||||  | ||||||||||||||| | | |||||||||||||||    
T  8435380 aaaggatgtattaaattcaagagtgccctaggcagttgagttgattttt-gtaacataaacataataaaaacaataaaagttggtttttagaaaattaga 8435282  T
Q  245 ga 246  Q
    ||    
T  8435281 ga 8435280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 282
Target Start/End: Complemental strand, 15297542 - 15297340
Alignment:
Q  77 atcgaagtaataaat-aatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaaaaggatgtattaaattcaatgatgtcctag 175  Q
    ||||||||| ||||| ||||  |||||||  |||| ||| |||||||||||  ||||||||||||||||||| |||||||||||||||| | || ||||     
T  15297542 atcgaagtagtaaatgaattcatatccacggggaccgttgttaacttctacaaagcaatttcattatcaaaatgatgtattaaattcaaggttgccctaa 15297443  T
Q  176 gtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctcc 275  Q
    | ||||  | | | ||||||||||  |||||  || ||||| ||||||  |||||| | | |||||| |||||| |||| |||||||||| |||||||||    
T  15297442 gcagtt-ggattagtttttgtaac--aaactatttgaaaacgataaaaacttggttct-ggaaattaaagagaaatatgattaagaccttcgaatcctcc 15297347  T
Q  276 gaagttc 282  Q
    || ||||    
T  15297346 gatgttc 15297340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 236
Target Start/End: Original strand, 23990235 - 23990325
Alignment:
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttaga 236  Q
    ||||||||||||||||||| | |||  ||||| |||| |||| ||||| ||||||||| || |||||||||||||||||||| |||||||||    
T  23990235 aaaggatgtattaaattcagtaatgctctaggcagttgagttaatttt-tgtaacatatacggattaaaaacaataaaagataggttttaga 23990325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 121 - 277
Target Start/End: Complemental strand, 21153424 - 21153269
Alignment:
Q  121 ttctacttagcaatttcattatcaaaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaata 220  Q
    |||||||||  ||||||| |||| ||||||||||||||||| |  | || |||||| ||||   ||  ||||||||||||| |||| ||| ||||||||     
T  21153424 ttctacttaaaaatttcaatatcgaaaggatgtattaaatttatggttgccctaggcagttggattagttttttgtaacattaact-atttaaaacaatc 21153326  T
Q  221 aaagatt-ggttttagaaaattagagagaagtatggttaagacctttgaatcctccga 277  Q
    |||| || ||||||||||| |||  ||||| ||||||||||||||| |||||||||||    
T  21153325 aaagctttggttttagaaa-ttaatgagaaatatggttaagaccttcgaatcctccga 21153269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 289
Target Start/End: Original strand, 27282274 - 27282351
Alignment:
Q  212 aaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||| ||| |||||||||| ||| |||||||||||||||||||||||| || |||| ||||||||||| ||||||    
T  27282274 aaaacaattaaa-attggttttatgaatattagagagaagtatggttaagactttcgaattctccgaagttctcctatg 27282351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 22456648 - 22456736
Alignment:
Q  200 ataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||  |||||||| ||||||| |||||| | |||| ||| ||||||  ||||| |||||||| |||||||||||||||| ||||||    
T  22456648 ataaactatttaaaaacgataaaagcttggttctggaaa-ttaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 22456736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 77 - 289
Target Start/End: Original strand, 19664696 - 19664909
Alignment:
Q  77 atcgaagtaataaataa-tttgtatccacaaggactgttattaacttctacttagcaatttcattatc-aaaaggatgtattaaattcaatgatgtccta 174  Q
    ||||||||||||||||| ||||||||||| ||||| ||| || | ||||||| | ||||||| ||||| ||||||||||||||||||||| | || ||||    
T  19664696 atcgaagtaataaataaatttgtatccacgaggaccgttgtttatttctactcaacaatttctttatcaaaaaggatgtattaaattcaaggttgcccta 19664795  T
Q  175 ggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctc 274  Q
    || ||||   |||  | ||||||| |||||| |||||||||||||||||| ||||||| ||||||||||||||| |||||||||||||||| ||||||||    
T  19664796 ggcagttggattg-gtatttgtaaaataaacggattaaaaacaataaaagtttggtttaagaaaattagagagatgtatggttaagaccttcgaatcctc 19664894  T
Q  275 cgaagttcacctatg 289  Q
    |||||||| ||||||    
T  19664895 cgaagttctcctatg 19664909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 145 - 289
Target Start/End: Complemental strand, 16883820 - 16883677
Alignment:
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattaga 244  Q
    |||||||||||||||||||| | |  |||||| |||| | ||||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||    
T  16883820 aaaggatgtattaaattcaagggttccctaggcagttgaattgattttt-gtaacataaacgaattaaaaacaataaaagattggttttagaaaattaga 16883722  T
Q  245 gagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||||| || ||||||| |||||||| ||||||    
T  16883721 gagaagtatggttaagacattcgaatccttcgaagttctcctatg 16883677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 77 - 281
Target Start/End: Complemental strand, 15535270 - 15535066
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-ggatgtattaaattcaatgatgtccta 174  Q
    ||||||||||||||||| || |||||||| ||||| ||| |||||||||||| ||| ||||| |||| |||| ||||||||||||||||| | || ||||    
T  15535270 atcgaagtaataaataaattcgtatccacgaggaccgttgttaacttctactcagccatttctttataaaaaaggatgtattaaattcaaggttgcccta 15535171  T
Q  175 ggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctc 274  Q
    || |||| ||||||||||  |||| | |||  |||||||||||||||||| ||||||||| ||||||| || || ||||||||||||||||  |||||||    
T  15535170 ggcagttgagttgatttt--gtaaaacaaatagattaaaaacaataaaagtttggttttacaaaattaaagtgatgtatggttaagaccttcaaatcctc 15535073  T
Q  275 cgaagtt 281  Q
    |||||||    
T  15535072 cgaagtt 15535066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 13017189 - 13017433
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    |||||||||||||||||||| || | | || |||||||||||||| | || || ||||| |||||| |  ||||||||||||||||||||||||||| ||    
T  13017189 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactatatttaacttctacttagcaatttcattattaa 13017288  T
Q  146 aa-ggatgtattaaattcaat-gatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt--agaaaatt 241  Q
    || |||||||| || ||  || | || |||||| |||| |||||||||   ||||||||||||||||||||||||||||  |||||||||  ||||||||    
T  13017289 aaaggatgtataaatttatattggtgccctaggcagttgagttgattta--gtaacataaactgattaaaaacaataaagaattggtttttcagaaaatt 13017386  T
Q  242 agagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
     |||||||||||||||||| |||| ||||||||| ||| || ||||||    
T  13017387 -gagagaagtatggttaagtccttcgaatcctccaaagctctcctatg 13017433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 77 - 287
Target Start/End: Complemental strand, 15540784 - 15540574
Alignment:
Q  77 atcgaagtaataaataa-tttgtatccacaaggactgttattaacttctacttagcaatttcattatcaaaa-ggatgtattaaattcaatgatgtccta 174  Q
    ||||||||||||||||| |||||| |||   ||||  || |||||||||||| |||||||||  |||||||| ||||||||||||||||| | |  ||||    
T  15540784 atcgaagtaataaataaatttgtaaccaatcggaccattgttaacttctactcagcaatttctatatcaaaaaggatgtattaaattcaaggtttcccta 15540685  T
Q  175 ggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctc 274  Q
    || |||| |||||||||| |  || |||||  |||||||||||||||||| || |||||||||||||| |||||  ||||||||||||||| ||||||||    
T  15540684 ggcagttgagttgattttct--aaaataaagggattaaaaacaataaaagtttagttttagaaaattaaagagatttatggttaagaccttcgaatcctc 15540587  T
Q  275 cgaagttcaccta 287  Q
    |||||||| ||||    
T  15540586 cgaagttctccta 15540574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 77 - 289
Target Start/End: Complemental strand, 32427514 - 32427303
Alignment:
Q  77 atcgaagtaataaataa-tttgtatccacaaggactgttattaacttctacttagcaatttcattatcaaaag-gatgtattaaattcaatgatgtccta 174  Q
    ||||||||||||||||| |||||||| || ||||| ||| |||| ||||||| ||||||||| |||||||||  |||||||||||||||| | || ||||    
T  32427514 atcgaagtaataaataaatttgtatctacgaggaccgttgttaa-ttctactcagcaatttctttatcaaaaaagatgtattaaattcaaggttgcccta 32427416  T
Q  175 ggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctc 274  Q
    |  ||||   ||| | ||| |||| ||||||  |||||||||||| |||| ||||||||||||||||||||||| || || |||||||||||||||||||    
T  32427415 gc-agttggattggtattt-gtaaaataaacgaattaaaaacaatgaaagtttggttttagaaaattagagagatgtttgattaagacctttgaatcctc 32427318  T
Q  275 cgaagttcacctatg 289  Q
     ||||||| ||||||    
T  32427317 tgaagttctcctatg 32427303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 14790864 - 14790620
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||||||||||| | |  | ||||||||| |||  || || |||||||| ||||| ||| |||| |||||||  |||||||| ||||||    
T  14790864 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtatccacgaggaccgttgttaatttctactcggcaatttctttatca 14790765  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| |||| |||||   |||||||||||||||  |   ||||||||||||| |||||||| |||| ||    
T  14790764 aaaaggatgtataaatttatattgattgccctaggcagttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatat 14790669  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  14790668 tagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 14790620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 149 - 289
Target Start/End: Original strand, 20527266 - 20527407
Alignment:
Q  149 gatgtattaaattcaatgat-gtcctaggtagttcagttgattttttgtaacataaac-tgattaaaaacaataaaagattggtttt-agaaaattagag 245  Q
    |||||||||||||||| | | | |||||| |||| | ||||||||| ||||| ||||| | | ||||||||||||||| |||||||| |||| |||||||    
T  20527266 gatgtattaaattcaaaggttgccctaggcagttgaattgattttt-gtaacgtaaacataaataaaaacaataaaag-ttggttttaagaatattagag 20527363  T
Q  246 agaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||||||| |||||||||||||||| ||||||    
T  20527364 agaagtatggttaagaccttcgaatcctccgaagttctcctatg 20527407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 22221967 - 22221726
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    ||||||| ||||||||||||||| | |  | ||||||||| |||  |||| || ||||| |||||| |  ||| |||||||| |||||||||||||| ||    
T  22221967 tgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaa 22221868  T
Q  146 aa-ggatgtattaaat-tcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaatta 242  Q
    || |||||||| || | | | || || |||||| |||| |||||||||   ||||  |||||| |||||||||||||||  ||||||||| ||||||||     
T  22221867 aaaggatgtataaattattattggtgccctaggcagttgagttgattta--gtaa--taaactaattaaaaacaataaagaattggtttttagaaaatt- 22221773  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||| ||||||||| |||| ||||||||||||| || ||||||    
T  22221772 gagagaagcatggttaagtccttcgaatcctccgaagctctcctatg 22221726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 22247802 - 22247561
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    ||||||| ||||||||||||||| | |  | ||||||||| |||  |||| || ||||| |||||| |  ||| |||||||| |||||||||||||| ||    
T  22247802 tgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaataaattcgtttccacgaggactatatttagcttctactaagcaatttcattattaa 22247703  T
Q  146 aa-ggatgtattaaat-tcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaatta 242  Q
    || |||||||| || | | | || || |||||| |||| |||||||||   ||||  |||||| |||||||||||||||  ||||||||| ||||||||     
T  22247702 aaaggatgtataaattattattggtgccctaggcagttgagttgattta--gtaa--taaactaattaaaaacaataaagaattggtttttagaaaatt- 22247608  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||| ||||||||| |||| ||||||||||||| || ||||||    
T  22247607 gagagaagcatggttaagtccttcgaatcctccgaagctctcctatg 22247561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 14795892 - 14795648
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||||||||||| | |  | ||||||||| |||  || || ||| | || ||||| ||| |||| |||||||  |||||||| ||||||    
T  14795892 tgatagatatttggcaagtgtaccaaaagctatcgaagtagtaataaagttcgtacctacgaggaccgttgttaatttctactcggcaatttctttatca 14795793  T
Q  145 aaa-ggatgtattaaattcaat-gat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaat 240  Q
    ||| |||||||| || ||  || ||| | |||||| |||| |||||   |||||||||||||||  |   ||||||||||||| |||||||| |||| ||    
T  14795792 aaaaggatgtataaatttatattgattgccctaggcagttgagttg---ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatat 14795697  T
Q  241 tagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  14795696 tagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 14795648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 289
Target Start/End: Original strand, 30978338 - 30978455
Alignment:
Q  171 cctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt--agaaaattagagagaagtatggttaagacctttga 268  Q
    |||||| |||| |||||||||   ||||||||||||||||||||||||||||  |||||||||  |||||||| |||||||||||||||||| |||| ||    
T  30978338 cctaggcagttgagttgattta--gtaacataaactgattaaaaacaataaagaattggtttttaagaaaatt-gagagaagtatggttaagtccttcga 30978434  T
Q  269 atcctccgaagttcacctatg 289  Q
    ||||||| ||| || ||||||    
T  30978435 atcctccaaagctctcctatg 30978455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 289
Target Start/End: Complemental strand, 27649180 - 27649104
Alignment:
Q  213 aaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||    
T  27649180 aaacaataaaag-ttggttttaagaaaattagagcgaagtatggttaagaccttcgaatcctccgaagttctcctatg 27649104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 191 - 289
Target Start/End: Original strand, 32704400 - 32704498
Alignment:
Q  191 ttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||  |   ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||| |||||||| ||||||| ||||||    
T  32704400 ttttgtaacataaacgtaaataaaacaataaaag-ttggttttcagaatattagagagaagtatggttaagaccttcgaatcctctgaagttctcctatg 32704498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 1838552 - 1838475
Alignment:
Q  212 aaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||| |||||||| ||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  1838552 aaaagaataaaag-ttggttttaagaatattagagagaagtatggttaagaccttcgaatcctccgaagttctcctatg 1838475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 145 - 246
Target Start/End: Original strand, 11183937 - 11184037
Alignment:
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattaga 244  Q
    ||||||||||||||||||||   |  |||||| |||| |||||||||| ||||||||||||  | ||||||||||||||| | | |||||||||||||||    
T  11183937 aaaggatgtattaaattcaagagttccctaggcagttgagttgatttt-tgtaacataaacgtaataaaaacaataaaagttggtttttagaaaattaga 11184035  T
Q  245 ga 246  Q
    ||    
T  11184036 ga 11184037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 12980648 - 12980736
Alignment:
Q  200 ataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||  |||||||| ||||||| |||||| | |||||||| ||||||  ||||| |||||||| |||||||||||||||| ||||||    
T  12980648 ataaactatttaaaaacgataaaagcttggttct-gaaaattaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 12980736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 1838690 - 1838610
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatc-aaaaggatgtat 155  Q
    ||||||||||||||||| || |||||||||||||| ||| |||| |||||||  |||||||| ||||| ||||||||||||    
T  1838690 atcgaagtaataaataaattcgtatccacaaggaccgttgttaatttctactcggcaatttctttatcaaaaaggatgtat 1838610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 200 - 289
Target Start/End: Original strand, 12983535 - 12983623
Alignment:
Q  200 ataaactgattaaaaacaataaaagattggttttagaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||  |||||||| ||||||| |||||| | |||| ||| ||||||  ||||| |||||||| |||||||||||||||| ||||||    
T  12983535 ataaactatttaaaaacgataaaagcttggttctggaaa-ttaaagagaaaaatggtcaagaccttcgaatcctccgaagttctcctatg 12983623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 27649347 - 27649231
Alignment:
Q  45 atgatagatatttggcaagtgtactagagtcaatcgaagtaataaataa-tttgtatccacaaggactgttattaacttctacttagcaatttcattatc 143  Q
    |||||||| |||||||||||| |||| |  | |||||||||||||||||  | | |||||| ||||| ||| |||| | ||||| ||||||||| || ||    
T  27649347 atgatagagatttggcaagtgaacta-aaactatcgaagtaataaataagatcgaatccacgaggaccgttgttaattcctactcagcaatttctttctc 27649249  T
Q  144 aaaaggatgtattaaatt 161  Q
     |||||||| ||||||||    
T  27649248 gaaaggatgcattaaatt 27649231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 91; Significance: 4e-44; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 22626312 - 22626554
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    |||||||||||||||||||| || | | || |||||||||||||| | || || ||||| ||||||||  ||||||||||||||||||||||||||| ||    
T  22626312 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 22626411  T
Q  146 aa-ggatgtattaaattcaat-gatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattag 243  Q
    || |||||||| || ||  || | || |||||| |||| |||||||||   ||||||||||||||||||||||||||||  ||||| ||||||||||| |    
T  22626412 aaaggatgtataaatttatattggtgccctaggcagttgagttgattta--gtaacataaactgattaaaaacaataaagaattggatttagaaaatt-g 22626508  T
Q  244 agagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||| |||| ||||||||| ||| || ||||||    
T  22626509 agagaagtatggttaagtccttcgaatcctccaaagctctcctatg 22626554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 11138570 - 11138812
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcatta-tca 144  Q
    |||||||||||||||||||| || | | || |||||||||||||| | || || ||||| ||||||||  |||||||||||||||||||||||||| | |    
T  11138570 tgatagatatttggcaagtgaaccaaattcgatcgaagtaataaaaagttcgtttccacgaggactgtatttaacttctacttagcaatttcattattaa 11138669  T
Q  145 aaaggatgtattaaatt-caatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattag 243  Q
    ||||||||||| || ||  | || || |||||| |||| ||||||  ||| |||||||||||||||||||||||||| |  ||||| || |||||||| |    
T  11138670 aaaggatgtataaatttatattggtgccctaggcagttgagttga--tttagtaacataaactgattaaaaacaatatagaattggattcagaaaatt-g 11138766  T
Q  244 agagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||||||| |||| ||||||||| ||| || ||||||    
T  11138767 agagaagtatggttaagtccttcgaatcctccaaagctctcctatg 11138812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 46 - 277
Target Start/End: Original strand, 39563510 - 39563742
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattat-ca 144  Q
    |||||||||||||||||||| || | | |||||| |||||||||| |||| || ||||| ||||||| |||||||||||||||||||||||||||||  |    
T  39563510 tgatagatatttggcaagtgaaccaaattcaatcaaagtaataaaaaattcgtttccacgaggactg-tattaacttctacttagcaatttcattataaa 39563608  T
Q  145 aaaggatgtattaaattca-atga-tgtcctaggtagttcagttgattttttgtaacataaac-tgattaaaaacaataaaagattggttttagaaaatt 241  Q
    ||||||||| | ||||| | || | || |||||| |||| ||||||  |||||||||||||||   |||||||| | ||||||||||||||||||||||     
T  39563609 aaaggatgtgtaaaatttatattagtgccctaggcagttgagttga--ttttgtaacataaacaaaattaaaaatagtaaaagattggttttagaaaatc 39563706  T
Q  242 agagagaagtatggttaagacctttgaatcctccga 277  Q
     |||||||| ||||||||| |||| |||||||||||    
T  39563707 tgagagaagaatggttaagtccttcgaatcctccga 39563742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 13979565 - 13979488
Alignment:
Q  212 aaaacaataaaagattggtttta-gaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| || ||||||    
T  13979565 aaaacaataaaag-ttggttttaagaatattagagagaagtatggttaagacctttgaatcctccgaagctctcctatg 13979488  T

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Target: chr3; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 224 - 282
Target Start/End: Complemental strand, 46731561 - 46731503
Alignment:
Q  224 gattggttttagaaaattagagagaagtatggttaagacctttgaatcctccgaagttc 282  Q
    ||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||    
T  46731561 gattggttttagaaaattagagagatgtaaggttaagaccttcgaatcctccgaagttc 46731503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 46731669 - 46731563
Alignment:
Q  77 atcgaagtaataaataa-tttgtatccacaaggactgttattaacttctacttagcaatttcattatc-aaaaggatgtattaaattcaatgatgtccta 174  Q
    ||||||||||| ||||| ||||||||||| ||||| ||| |||||||||||| ||||||||| ||||| |||||||||||||||| |||| | || ||||    
T  46731669 atcgaagtaatgaataaatttgtatccacgaggaccgttgttaacttctactcagcaatttctttatcaaaaaggatgtattaaactcaaggttgcccta 46731570  T
Q  175 ggtagtt 181  Q
    || ||||    
T  46731569 ggcagtt 46731563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 274
Target Start/End: Complemental strand, 35366559 - 35366392
Alignment:
Q  106 aggactgttattaacttctacttagcaatttcattatcaaaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaac 205  Q
    ||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||  | | || |||||| |||  |||||  | ||||||||||||||    
T  35366559 aggaccgttgttaacttctacttagcaatttcattataaaaaggatgtattaaattttaggttgccctaggcagtcgagttg-gtatttgtaacataaac 35366461  T
Q  206 tgattaaaaacaataaaagattggttttagaaaatta-gagagaagtatggttaagacctttgaatcctc 274  Q
    ||  |||| ||  |||||| ||||||||||||| | | |||| || ||||||||||| |||  |||||||    
T  35366460 tgtgtaaagacggtaaaag-ttggttttagaaattaatgagaaaaatatggttaagatcttcaaatcctc 35366392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 97 - 181
Target Start/End: Original strand, 20536387 - 20536472
Alignment:
Q  97 gtatccacaaggactgttattaacttctacttagcaatttcatta-tcaaaaggatgtattaaattcaatgatgtcctaggtagtt 181  Q
    |||||||| ||||||||  ||||||||||||||| |||||||||| | ||||||||||| ||||||||| | || |||||| ||||    
T  20536387 gtatccacgaggactgtatttaacttctacttagaaatttcattattaaaaaggatgtagtaaattcaagggtgccctaggcagtt 20536472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 50096925 - 50096825
Alignment:
Q  145 aaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggttttagaaaattaga 244  Q
    ||||||||||||||||||||   || |||| | |||| ||||||||||| |||||||||||  | |||||||| |||||| | | |||||||||||||||    
T  50096925 aaaggatgtattaaattcaagagtgccctaagcagttgagttgattttt-gtaacataaacgtaataaaaacagtaaaagttggtttttagaaaattaga 50096827  T
Q  245 ga 246  Q
    ||    
T  50096826 ga 50096825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 160
Target Start/End: Complemental strand, 13979700 - 13979616
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatcaaaaggatgtattaaat 160  Q
    |||||||||||||||||  | | |||||| ||||||| | |||| ||||||| ||||||||| ||||| ||||||||||||||||    
T  13979700 atcgaagtaataaataaaatcgaatccacgaggactgctgttaatttctactcagcaatttctttatcgaaaggatgtattaaat 13979616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 161
Target Start/End: Complemental strand, 19869343 - 19869226
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataa-ataatttgtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||||||||||||||||||||| | || ||| ||||| ||| | | || |||||||| ||||| ||| |||| ||||||||||||| ||| |||  |    
T  19869343 tgatagatatttggcaagtgtactaaaatctatcaaagtagtaataaagttcgtatccacgaggaccgttgttaatttctacttagcaagttcgttaaaa 19869244  T
Q  145 -aaaggatgtattaaatt 161  Q
     |||||||||| ||||||    
T  19869243 taaaggatgtagtaaatt 19869226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 274
Target Start/End: Complemental strand, 47412342 - 47412199
Alignment:
Q  130 gcaatttcattatcaaaaggatgtattaaattcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattgg 229  Q
    ||||||||||||||||||||||||||||||||  | | ||  ||||  | |  ||||| | ||| |||||||||||||  |||| ||  |||||| ||||    
T  47412342 gcaatttcattatcaaaaggatgtattaaatttcaggttgctctagacaatcgagttggtattt-gtaacataaactgtgtaaagacggtaaaag-ttgg 47412245  T
Q  230 ttttagaaaatta-gagagaagtatggttaagacctttgaatcctc 274  Q
    ||||||||||| | |||| || |||| |||||||||||||||||||    
T  47412244 ttttagaaaataatgagaaaaatatgattaagacctttgaatcctc 47412199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 46542641 - 46542571
Alignment:
Q  92 aatttgtatccacaaggactgttattaacttctacttagcaatttcatt-atcaaaaggatgtattaaatt 161  Q
    |||| ||||| || |||||||||||||| ||||| |||||||||||||| ||  ||| |||||||||||||    
T  46542641 aattcgtatctacgaggactgttattaatttctatttagcaatttcattaatgtaaaagatgtattaaatt 46542571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 77; Significance: 9e-36; HSPs: 2)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 11 - 251
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    |||||||| ||||||||||| || | || | ||||||||| ||||||||| || ||||| ||||| ||| |||||| | ||||||||||||| |||||||    
T  11 tgatagatttttggcaagtgaaccaaag-ctatcgaagtagtaaataattcgt-tccacgaggaccgttgttaactacaacttagcaatttctttatcaa 108  T
Q  146 aa-ggatgtattaaattcaatgat-gtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaatta 242  Q
    || |||| | |||||||||||| | | |||||| |||| ||||| |||||   |||||||||  ||||||||||||||||| |||||||| |||| ||||    
T  109 aaaggatatgttaaattcaatggttgccctaggcagttgagttggttttt---aacataaacaaattaaaaacaataaaag-ttggttttaagaatatta 204  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||||||| || |||||||||||| ||| ||||||    
T  205 gagagaagtatggttaagacattcgaatcctccgaatttctcctatg 251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 278
Target Start/End: Original strand, 283 - 322
Alignment:
Q  239 attagagagaagtatggttaagacctttgaatcctccgaa 278  Q
    |||||||||||||||||||||||| || ||||||||||||    
T  283 attagagagaagtatggttaagacattcgaatcctccgaa 322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0440 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0440
Description:

Target: scaffold0440; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 46 - 289
Target Start/End: Complemental strand, 10109 - 9865
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaat-aatttgtatccacaaggactgttattaacttctacttagcaatttcattatca 144  Q
    ||||||| |||||||||||| |  | | || ||||||||||||||  |||| || ||| || |||||||  ||||||||||||||||||||||||||| |    
T  10109 tgatagaaatttggcaagtgaatcaaattcgatcgaagtaataaaagaattcgtttcctcagggactgtatttaacttctacttagcaatttcattatta 10010  T
Q  145 aaa-ggatgtattaaattcaat-gatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattggtttt-agaaaatt 241  Q
    ||| |||||||| || ||  || | |  |||||| |||| |||||||||   ||||||||||||||||||||||||||||  ||||||||| ||||||||    
T  10009 aaaaggatgtataaatttatattggtcccctaggcagttgagttgattta--gtaacataaactgattaaaaacaataaataattggtttttagaaaatt 9912  T
Q  242 agagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
     |||||||||||||||||| |||| ||||||||||||| || ||||||    
T  9911 -gagagaagtatggttaagtccttcgaatcctccgaagctctcctatg 9865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0264 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0264
Description:

Target: scaffold0264; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 46 - 289
Target Start/End: Original strand, 24185 - 24426
Alignment:
Q  46 tgatagatatttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatcaa 145  Q
    ||||||| ||||||||||||||| | |  | ||||||||| |||  ||||||| ||||| ||||||||  |||||||||||| | |||||||||||| ||    
T  24185 tgatagaaatttggcaagtgtaccaaaagctatcgaagtagtaataaatttgtttccacgaggactgtatttaacttctactcaacaatttcattattaa 24284  T
Q  146 aa-ggatgtattaaat-tcaatgatgtcctaggtagttcagttgattttttgtaacataaactgattaaaaacaataaaagattgg-ttttagaaaatta 242  Q
    || |||||||| || | | | || || |||||| |||| |||||||||   ||||  ||||||||||||||||||||||  ||||| ||||||||||||     
T  24285 aaaggatgtataaattattattggtgccctaggcagttgagttgattta--gtaa--taaactgattaaaaacaataaagaattggtttttagaaaatt- 24379  T
Q  243 gagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||| ||||||||| |||| ||||||||||||| || ||||||    
T  24380 gagagaagcatggttaagtccttcgaatcctccgaagctctcctatg 24426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 77 - 165
Target Start/End: Original strand, 2649 - 2738
Alignment:
Q  77 atcgaagtaataaataattt-gtatccacaaggactgttattaacttctacttagcaatttcattatcaaaaggatgtattaaattcaat 165  Q
    |||||||||||||||||  | |||||||| ||||| ||| |||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  2649 atcgaagtaataaataagatcgtatccacgaggaccgttgttaacttctactcagcaatttcgttatcaaaaggatgtattaaattcaat 2738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 289
Target Start/End: Original strand, 2794 - 2847
Alignment:
Q  236 aaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||| ||||||||||| ||||||||||||||||||||||||| || ||||||    
T  2794 aaaatttgagagaagtatcgttaagacctttgaatcctccgaagctctcctatg 2847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0567 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0567
Description:

Target: scaffold0567; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 289
Target Start/End: Original strand, 5995 - 6054
Alignment:
Q  230 ttttagaaaattagagagaagtatggttaagacctttgaatcctccgaagttcacctatg 289  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||    
T  5995 ttttagaaaattagagagaagtatggttaagaccttcgaatcctccgaggttctcctatg 6054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0766 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0766
Description:

Target: scaffold0766; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 163
Target Start/End: Complemental strand, 3739 - 3633
Alignment:
Q  55 tttggcaagtgtactagagtcaatcgaagtaataaataatttgtatccacaaggactgttattaacttctacttagcaatttcattatca-aaaggatgt 153  Q
    |||||||||||||| | | || ||||||||||||||  |||||||||||| ||||| ||| |||||||||||| |||||||| ||||  | ||| |||||    
T  3739 tttggcaagtgtacca-attctatcgaagtaataaa--atttgtatccacgaggaccgttgttaacttctactcagcaatttaattaagataaatgatgt 3643  T
Q  154 attaaattca 163  Q
    ||||||||||    
T  3642 attaaattca 3633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0500 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Complemental strand, 2758 - 2710
Alignment:
Q  226 ttggttttagaaaattagagagaagtatggttaagacctttgaatcctc 274  Q
    |||||||||||||||  |||||||| ||||||||| |||| ||||||||    
T  2758 ttggttttagaaaatctgagagaagaatggttaagtccttcgaatcctc 2710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0063 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 274
Target Start/End: Original strand, 7173 - 7221
Alignment:
Q  226 ttggttttagaaaattagagagaagtatggttaagacctttgaatcctc 274  Q
    |||||||||||||||  |||||||| ||||||||| |||| ||||||||    
T  7173 ttggttttagaaaatctgagagaagaatggttaagtccttcgaatcctc 7221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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