View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_low_3 (Length: 537)
Name: NF15002_low_3
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 228 - 522
Target Start/End: Original strand, 30957206 - 30957500
Alignment:
| Q |
228 |
gtctctcatttggactcttgtgcttttcatctagctagctaaaataactttaatttgcaaaccattctttgtagctagtacttctctttaacccgtacta |
327 |
Q |
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| T |
30957206 |
gtctctcatttggactcttgtgcttttcatctagctagctaaaataactttaatttgcaaaccattctttgtagctagtacttctctttaacccgtacta |
30957305 |
T |
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| Q |
328 |
gcgatgtcaatgtattgatagttattttattctatcaagattatatagaaaggggaaggaagaggaagaatggaatataattgatctccatccttaggat |
427 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
30957306 |
gcgatgtcaatgtattgatagttattttattctatcaagattatatagaaaggggaaggaagaggaagaatggaatataattgatccccatccttaggat |
30957405 |
T |
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| Q |
428 |
tgattgtatcttcttttttnnnnnnnnnnnnnttaaatattaataatgtgtcattaataatcatttcattcatatgagatttgaactttggtctt |
522 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30957406 |
tgattgtatcttcttttttaaaaataaaaaaattaaatattaataatgtgtcattaataatcatttcattcatatgagatttgaactttgatctt |
30957500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 12 - 144
Target Start/End: Original strand, 30956990 - 30957122
Alignment:
| Q |
12 |
atgaagggcataggcattacctaaagatgtatggtcaagtgaatgtgtggtgtaaagtggaaaagtcttagaagtttgcttacagatttattctgttagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30956990 |
atgaagggcataggcattacctaaagatgtatggtcaagtgaatgtgtggtgtaaagtggaaaagtcttagaagtttgcttacagatttattctgttagc |
30957089 |
T |
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| Q |
112 |
cggctttggattcatctctatagcaagacatat |
144 |
Q |
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| T |
30957090 |
cggctttggattcatctctatagcaagacatat |
30957122 |
T |
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