View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15002_low_5 (Length: 479)
Name: NF15002_low_5
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15002_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 15 - 461
Target Start/End: Complemental strand, 46735183 - 46734732
Alignment:
| Q |
15 |
atgaacaattacaaaactacgctttaaaaaataaaa-tcctatagttccacatcataaaggaaaggagaaaaataagcatacaaaagtttattagtaatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735183 |
atgaacaattacaaaactacgctttaaaaaataaaaatcctatagttccacatcataaaggaaaggagaaaaataagcatacaaaagtttattagtaatc |
46735084 |
T |
|
| Q |
114 |
atgaatttaaataaatgagagtgtgaaggatattaagtttatacttttgtgacatttgaatgatcaagtttttgccacacagtaacctcctgccgaaatg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46735083 |
atgaatttaaataaatgagagtgtgaaggatattaagtttatacttttgtgacatttgaatgatcaagtttttgccacacagtaacctcctgccgaaatg |
46734984 |
T |
|
| Q |
214 |
atgctcgtaaagcagcagtttcagcagcagtggcaacaccatcctcaccccagtccaacactttcactagaaaattaaacataacaattcagtgagaaat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46734983 |
atgctcgtaaagcagcagtttcagcagcagtggcaacaccatcctcaccccagtccaacactttcactagaaaattaaacataacaattcagtgagaaat |
46734884 |
T |
|
| Q |
314 |
ctnnnnnnnnnnnntattcaagagcaagctagagtatgacttgag----tttttgttttatgcaaacagcgtaactaaataggaaattaacttgttatat |
409 |
Q |
| |
|
|| |||||||||||||| |||| ||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46734883 |
ctaaaaacaaaaaatattcaagagcaagttagactatgacttgagttttttttttttttatgcaagcagcgtaactaaataggaaattaacttgttatat |
46734784 |
T |
|
| Q |
410 |
agctttaaattgcaacctgaagccgcaatgtaaagattatataggcctttac |
461 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
46734783 |
agctttaaattgcaacctgaagccgcaatgtaaagattatataggcctttac |
46734732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 15 - 224
Target Start/End: Original strand, 19411190 - 19411404
Alignment:
| Q |
15 |
atgaacaattacaaaactacgctttaaaaa-ataaaa-tcctatagttccacatcataaaggaaaggagaaaaataagcatacaaa--agtttat-tagt |
109 |
Q |
| |
|
||||||||||| ||||||| || ||||||| |||||| ||||| || ||||| ||||||||||||||||||||||||| ||||||| | |||| |||| |
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|
| T |
19411190 |
atgaacaattataaaactatgcgttaaaaatataaaaatcctacagctccacctcataaaggaaaggagaaaaataagaatacaaattattttaagtagt |
19411289 |
T |
|
| Q |
110 |
aattatgaatttaaataaatgagagtgtgaaggatattaagtttatacttttgtgacatttgaatgatcaagtttttgccacacagtaacctcctgccga |
209 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
19411290 |
aatcatgaatttaaataaatgagagtgtgaaggatattaagtttgtacttttgtgacatttgaatgatcaagtttttgctacacagtaacctcctgccga |
19411389 |
T |
|
| Q |
210 |
aatgatgctcgtaaa |
224 |
Q |
| |
|
||||||||||||||| |
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|
| T |
19411390 |
aatgatgctcgtaaa |
19411404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 155 - 281
Target Start/End: Complemental strand, 984492 - 984366
Alignment:
| Q |
155 |
tacttttgtgacatttgaatgatcaagtttttgccacacagtaacctcctgccgaaatgatgctcgtaaagcagcagtttcagcagcagtggcaacacca |
254 |
Q |
| |
|
|||||| |||||||||| ||| || ||||| ||||| || | ||||||||||| ||| ||||| ||||||||||||||||| ||||| |||||| ||||| |
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|
| T |
984492 |
tactttagtgacatttggatggtcgagtttgtgccagacggcaacctcctgcctaaaagatgcacgtaaagcagcagtttctgcagcggtggcagcacca |
984393 |
T |
|
| Q |
255 |
tcctcaccccagtccaacactttcact |
281 |
Q |
| |
|
||||||||||| ||||||||||||||| |
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|
| T |
984392 |
tcctcaccccaatccaacactttcact |
984366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 155 - 279
Target Start/End: Complemental strand, 37222765 - 37222641
Alignment:
| Q |
155 |
tacttttgtgacatttgaatgatcaagtttttgccacacagtaacctcctgccgaaatgatgctcgtaaagcagcagtttcagcagcagtggcaacacca |
254 |
Q |
| |
|
|||||| ||| |||||| ||| || ||||| | ||| || | ||||||||||| ||| ||||| |||||||| |||||||| ||||| |||||| ||||| |
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|
| T |
37222765 |
tactttcgtggcatttggatggtcgagtttgtaccagacggcaacctcctgcctaaaggatgcacgtaaagcggcagtttccgcagcggtggcagcacca |
37222666 |
T |
|
| Q |
255 |
tcctcaccccagtccaacactttca |
279 |
Q |
| |
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||||||||||| ||||||||||||| |
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|
| T |
37222665 |
tcctcaccccaatccaacactttca |
37222641 |
T |
|
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