View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15002_low_8 (Length: 466)

Name: NF15002_low_8
Description: NF15002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15002_low_8
NF15002_low_8
[»] chr4 (3 HSPs)
chr4 (1-451)||(7457511-7457961)
chr4 (1-448)||(7411435-7411882)
chr4 (3-447)||(44919571-44920015)
[»] scaffold0496 (1 HSPs)
scaffold0496 (11-448)||(2363-2800)
[»] scaffold1330 (1 HSPs)
scaffold1330 (11-448)||(1165-1602)
[»] scaffold0345 (1 HSPs)
scaffold0345 (11-448)||(3776-4213)
[»] scaffold0105 (5 HSPs)
scaffold0105 (11-448)||(34766-35203)
scaffold0105 (11-417)||(9971-10377)
scaffold0105 (11-417)||(48397-48803)
scaffold0105 (11-318)||(3889-4196)
scaffold0105 (388-448)||(4266-4326)
[»] chr5 (1 HSPs)
chr5 (20-76)||(17356619-17356675)


Alignment Details
Target: chr4 (Bit Score: 415; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 7457961 - 7457511
Alignment:
Q  1 agctccaattccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttcca 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  7457961 agctccaattccaccaaggacataaaatttttcatccataaatacacccgaacacatttttcttgctttattcatgtttggaagggtttcccattttcca 7457862  T
Q  101 gtgtctgagttgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacg 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  7457861 gtgtctgagttgtaaatctcagctgagctcaagatgttgccacatggatcacaaccacctgctaatattgcaatttctccaaggctggatgaaccgaacg 7457762  T
Q  201 agcatcttggagtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactag 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7457761 agcatcttggagtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactag 7457662  T
Q  301 aagctcagtaccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatca 400  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7457661 aagctcagtaccgacagccaacgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgacttggatca 7457562  T
Q  401 aatgcctcccatttaagtagatcacaagagaagtaaacccgatgttcttct 451  Q
    ||||||||||||||||||| |||||||||||||||||||| ||||||||||    
T  7457561 aatgcctcccatttaagtaaatcacaagagaagtaaacccaatgttcttct 7457511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 448
Target Start/End: Complemental strand, 7411882 - 7411435
Alignment:
Q  1 agctccaattccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttcca 100  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| || ||||||    
T  7411882 agctccaattccaccaaggacataaaatttttcatccataaatacaccccaacacatttttcttgctttattcatgtttggaagggtttcccaatttcca 7411783  T
Q  101 gtgtctgagttgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacg 200  Q
    || |||| ||| || |||||||| |||||||| ||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || |  ||||| |||     
T  7411782 gtatctgcgttatagagctcagcagagctcaatatgctgccacgtggatcacaaccaccagctagtattgcaatttctccaagactagccgaaccaaaca 7411683  T
Q  201 agcatcttggagtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactag 300  Q
    |||||||||||||||||| ||||||||||| ||||||| ||||||  ||| ||| ||||||||||||| ||||| |||| |||||| ||||||| |||||    
T  7411682 agcatcttggagtattcatcatttttccaactgaccacatatttgtcagaaagttatacttatgaatgataggagccattaattcctttccaaagactag 7411583  T
Q  301 aagctcagtaccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatca 400  Q
    |||||||||||| |||||||  || ||| ||||  ||||| |||||  || ||||||||  ||| ||||||| || ||  |||||  |||||||||||||    
T  7411582 aagctcagtaccaacagccaatgattccctatctgacaacgtaaaacattgatcacaagtcattataggcaaatgcatccatcgattacgatttggatca 7411483  T
Q  401 aatgcctcccatttaagtagatcacaagagaagtaaacccgatgttct 448  Q
    || |||||||| | |||    ||| ||||||||||||||| |||||||    
T  7411482 aaagcctcccactcaagggcttcagaagagaagtaaacccaatgttct 7411435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 3 - 447
Target Start/End: Complemental strand, 44920015 - 44919571
Alignment:
Q  3 ctccaattccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttccagt 102  Q
    |||||| ||| |||||||||||||||||| |||||||||| ||  | ||||||||| | ||||   | ||||||||||||||    || ||| | || ||    
T  44920015 ctccaactccgccaaggacataaaatttttcatccataaacacggctgaacacattctccttggcgtgttcatgtctggaagaacctcccatgtgccggt 44919916  T
Q  103 gtctgagttgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacgag 202  Q
     |||||||| ||||||||||  |||||||| |||||||||  | ||||||| ||||| |||||||||||||||||||| |||||||  ||||| ||| ||    
T  44919915 atctgagttataaagctcagaagagctcaatatgttgccatgttgatcacaaccaccggctaatattgcaatttctccgaggctggcagaaccaaacaag 44919816  T
Q  203 catcttggagtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactagaa 302  Q
    ||||| ||||||||||   |  ||||  |  |||| | |||||  |||  |  ||||||||  |||| | | ||  | | ||| ||||||||||| ||||    
T  44919815 catctaggagtattcattttcattcccttcaaccatgaatttgtcagaatgctatacttatatatggcaaggccagttatttctcttccaaaaacaagaa 44919716  T
Q  303 gctcagtaccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatcaaa 402  Q
    |||| ||||| ||||| || |||||||| ||  | | |||||||  | ||| | ||   ||||| |||| ||| || || ||| |||||||||||||| |    
T  44919715 gctccgtaccaacagctagtgactccttgtctgaaagcataaaacatatattagaactcattttcggcagttgcatcaaccgatcacgatttggatcata 44919616  T
Q  403 tgcctcccatttaagtagatcacaagagaagtaaacccgatgttc 447  Q
     |||||||||||||| | ||||||||| |||||||||| ||||||    
T  44919615 ggcctcccatttaaggacatcacaagaaaagtaaacccaatgttc 44919571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0496 (Bit Score: 178; Significance: 8e-96; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 2800 - 2363
Alignment:
Q  11 ccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttccagtgtctgagt 110  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||| ||||||||| || || |||||||| |||| ||    
T  2800 ccaccaaggacgtaaaattttccatccataaatacacttgaacacatttttcttgctttattcatgtttggaagggtctcccaatttccagtatctgcgt 2701  T
Q  111 tgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacgagcatcttgg 210  Q
    | || |||||||| |||||||| ||| |||||| ||||||||| ||||| |||| |||||||||||||||||| || |  ||||| ||| ||||||||||    
T  2700 tatagagctcagcagagctcaatatgctgccacgtggatcacaaccaccagctagtattgcaatttctccaagactagccgaaccaaacaagcatcttgg 2601  T
Q  211 agtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactagaagctcagta 310  Q
    |||||||| ||||||||||| ||||||| ||||||  ||| ||| ||||||||||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  2600 agtattcatcatttttccaactgaccacatatttgtcagaaagttatacttatgaatgataggagccattaattcctttccaaagactagaagctcagta 2501  T
Q  311 ccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatcaaatgcctccc 410  Q
    || |||||||  || ||| ||||  ||||| |||||  || ||||||||  ||| ||||||| || ||  |||||  ||||||||||||||| |||||||    
T  2500 ccaacagccaatgattccctatctgacaacgtaaaacattgatcacaagtcattataggcaaatgcatccatcgattacgatttggatcaaaagcctccc 2401  T
Q  411 atttaagtagatcacaagagaagtaaacccgatgttct 448  Q
    | | |||    ||| ||||||||||||||| |||||||    
T  2400 actcaagggcttcagaagagaagtaaacccaatgttct 2363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1330 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold1330
Description:

Target: scaffold1330; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 1602 - 1165
Alignment:
Q  11 ccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttccagtgtctgagt 110  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |  || ||||||||||||| ||    
T  1602 ccaccaaggacataaaattttccatccatgaatacacttgaacacatttttcttgctttattcatgtttggaagggtcttccaatttccagtgtctgcgt 1503  T
Q  111 tgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacgagcatcttgg 210  Q
    | || |||||||| |||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| || |  ||||| ||| ||||||| ||    
T  1502 tatagagctcagcagagctcaatatgttgccacatggatcacaaccaccggctagtattgcaatttctccaagactagccgaaccaaacaagcatctcgg 1403  T
Q  211 agtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactagaagctcagta 310  Q
    |||||||| ||| ||||||| ||||||| ||||||  |||  |  ||||||||||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  1402 agtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttccaaagactagaagctcagta 1303  T
Q  311 ccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatcaaatgcctccc 410  Q
    || ||||||| ||| ||| ||||   || |  ||||  |  ||||||||  ||||| ||||| || ||  |||||  ||||||||||||||| |||||||    
T  1302 ccaacagccaacgattccctatctgccagcgaaaaacatgcatcacaagtcatttttggcaaatgtatccatcgattacgatttggatcaaaagcctccc 1203  T
Q  411 atttaagtagatcacaagagaagtaaacccgatgttct 448  Q
    |||||||    ||| |||||||||| |||| |||||||    
T  1202 atttaagggcttcagaagagaagtacacccaatgttct 1165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0345 (Bit Score: 162; Significance: 3e-86; HSPs: 1)
Name: scaffold0345
Description:

Target: scaffold0345; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 448
Target Start/End: Original strand, 3776 - 4213
Alignment:
Q  11 ccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttccagtgtctgagt 110  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |  || ||||||||||||| ||    
T  3776 ccaccaaggacataaaattttccatccatgaatacacttgaacacatttttcttgctttattcatgtttggaagggtcttccaatttccagtgtctgcgt 3875  T
Q  111 tgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacgagcatcttgg 210  Q
    | || |||||||| |||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| || |  ||||| ||| ||||||| ||    
T  3876 tatagagctcagcagagctcaatatgttgccacatggatcacaaccaccggctagtattgcaatttctccaagactagccgaaccaaacaagcatctcgg 3975  T
Q  211 agtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactagaagctcagta 310  Q
    |||||||| ||| ||||||| ||||||| ||||||  |||  |  ||||||||||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  3976 agtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttccaaagactagaagctcagta 4075  T
Q  311 ccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatcaaatgcctccc 410  Q
    || ||||||| ||| ||| ||||   || |  ||||  |  ||||||||  ||||| ||||| || ||  |||||  ||||||||||||||| |||||||    
T  4076 ccaacagccaacgattccctatctgccagcgaaaaacatgcatcacaagtcatttttggcaaatgtatccatcgattacgatttggatcaaaagcctccc 4175  T
Q  411 atttaagtagatcacaagagaagtaaacccgatgttct 448  Q
    |||||||    ||| |||||||||| |||| |||||||    
T  4176 atttaagggcttcagaagagaagtacacccaatgttct 4213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105 (Bit Score: 162; Significance: 3e-86; HSPs: 5)
Name: scaffold0105
Description:

Target: scaffold0105; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 11 - 448
Target Start/End: Complemental strand, 35203 - 34766
Alignment:
Q  11 ccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttccagtgtctgagt 110  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |  || ||||||||||||| ||    
T  35203 ccaccaaggacataaaattttccatccatgaatacacttgaacacatttttcttgctttattcatgtttggaagggtcttccaatttccagtgtctgcgt 35104  T
Q  111 tgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacgagcatcttgg 210  Q
    | || |||||||| |||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| || |  ||||| ||| ||||||| ||    
T  35103 tatagagctcagcagagctcaatatgttgccacatggatcacaaccaccggctagtattgcaatttctccaagactagccgaaccaaacaagcatctcgg 35004  T
Q  211 agtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactagaagctcagta 310  Q
    |||||||| ||| ||||||| ||||||| ||||||  |||  |  ||||||||||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  35003 agtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttccaaagactagaagctcagta 34904  T
Q  311 ccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatcaaatgcctccc 410  Q
    || ||||||| ||| ||| ||||   || |  ||||  |  ||||||||  ||||| ||||| || ||  |||||  ||||||||||||||| |||||||    
T  34903 ccaacagccaacgattccctatctgccagcgaaaaacatgcatcacaagtcatttttggcaaatgtatccatcgattacgatttggatcaaaagcctccc 34804  T
Q  411 atttaagtagatcacaagagaagtaaacccgatgttct 448  Q
    |||||||    ||| |||||||||| |||| |||||||    
T  34803 atttaagggcttcagaagagaagtacacccaatgttct 34766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 11 - 417
Target Start/End: Original strand, 9971 - 10377
Alignment:
Q  11 ccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttccagtgtctgagt 110  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |  || ||||||||||||| ||    
T  9971 ccaccaaggacataaaattttccatccatgaatacacttgaacacatttttcttgctttattcatgtttggaagggtcttccaatttccagtgtctgcgt 10070  T
Q  111 tgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacgagcatcttgg 210  Q
    | || |||||||| |||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| || |  ||||| ||| ||||||| ||    
T  10071 tatagagctcagcagagctcaatatgttgccacatggatcacaaccaccggctagtattgcaatttctccaagactagccgaaccaaacaagcatctcgg 10170  T
Q  211 agtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactagaagctcagta 310  Q
    |||||||| ||| ||||||| ||||||| ||||||  |||  |  ||||||||||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  10171 agtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttccaaagactagaagctcagta 10270  T
Q  311 ccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatcaaatgcctccc 410  Q
    || ||||||| ||| ||| ||||   || |  ||||  |  ||||||||  ||||| ||||| || ||  |||||  ||||||||||||||| |||||||    
T  10271 ccaacagccaacgattccctatctgccagcgaaaaacatgcatcacaagtcatttttggcaaatgtatccatcgattacgatttggatcaaaagcctccc 10370  T
Q  411 atttaag 417  Q
    |||||||    
T  10371 atttaag 10377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 11 - 417
Target Start/End: Complemental strand, 48803 - 48397
Alignment:
Q  11 ccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttccagtgtctgagt 110  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |  || ||||||||||||| ||    
T  48803 ccaccaaggacataaaattttccatccatgaatacacttgaacacatttttcttgctttattcatgtttggaagggtcttccaatttccagtgtctgcgt 48704  T
Q  111 tgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacgagcatcttgg 210  Q
    | || |||||||| |||||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| || |  ||||| ||| ||||||| ||    
T  48703 tatagagctcagccgagctcaatatgttgccacatggatcacaaccaccggctagtattgcaatttctccaagactagccgaaccaaacaagcatctcgg 48604  T
Q  211 agtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactagaagctcagta 310  Q
    |||||||| ||| ||||||| ||||||| ||||||  |||  |  ||||||||||||| ||||| |||| | |||| ||||||| |||||||||||||||    
T  48603 agtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattagttcctttccaaagactagaagctcagta 48504  T
Q  311 ccgacagccagcgactccttatcacacaacataaaaactttatcacaaggaattttaggcaattgaataaatcgaccacgatttggatcaaatgcctccc 410  Q
    || ||||||| ||| ||| ||||   || |  ||||  |  ||||||||  ||||| ||||| || ||  |||||  ||||||||||||||| |||||||    
T  48503 ccaacagccaacgattccctatctgccagcgaaaaacatgcatcacaagtcatttttggcaaatgtatccatcgattacgatttggatcaaaagcctccc 48404  T
Q  411 atttaag 417  Q
    |||||||    
T  48403 atttaag 48397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #4
Raw Score: 148; E-Value: 6e-78
Query Start/End: Original strand, 11 - 318
Target Start/End: Original strand, 3889 - 4196
Alignment:
Q  11 ccaccaaggacataaaattttccatccataaatacacccgaacacatttttcttgctttattcatgtctggaagggtttctcattttccagtgtctgagt 110  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||||||||||||||||||| ||||||||| |  || ||||||||||||| ||    
T  3889 ccaccaaggacataaaattttccatccatgaatacacttgaacacatttttcttgctttattcatgtttggaagggtcttccaatttccagtgtctgcgt 3988  T
Q  111 tgtaaagctcagctgagctcaagatgttgccacatggatcacacccacctgctaatattgcaatttctccaaggctggatgaaccgaacgagcatcttgg 210  Q
    | || |||||||| | |||||| |||||||||||||||||||| ||||| |||| |||||||||||||||||| || |  ||||| ||| ||||||| ||    
T  3989 tatagagctcagcagcgctcaatatgttgccacatggatcacaaccaccggctagtattgcaatttctccaagactagccgaaccaaacaagcatctcgg 4088  T
Q  211 agtattcaacatttttccaattgaccacgtatttgatagatagtcatacttatgaatggtaggacccatcaattcccttccaaaaactagaagctcagta 310  Q
    |||||||| ||| ||||||| ||||||| ||||||  |||  |  ||||||||||||| ||||| |||| |||||| ||||||| |||||||||||||||    
T  4089 agtattcatcatatttccaactgaccacatatttgtcagaaggctatacttatgaatgataggatccattaattcctttccaaagactagaagctcagta 4188  T
Q  311 ccgacagc 318  Q
    || |||||    
T  4189 ccaacagc 4196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0105; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 388 - 448
Target Start/End: Original strand, 4266 - 4326
Alignment:
Q  388 acgatttggatcaaatgcctcccatttaagtagatcacaagagaagtaaacccgatgttct 448  Q
    ||||||||||||||| ||||||||||||||    ||| |||||||||| |||| |||||||    
T  4266 acgatttggatcaaaagcctcccatttaagggcttcagaagagaagtacacccaatgttct 4326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Complemental strand, 17356675 - 17356619
Alignment:
Q  20 acataaaattttccatccataaatacacccgaacacatttttcttgctttattcatg 76  Q
    |||||||||||||||||||| |||||||| |||||||| || || | ||||||||||    
T  17356675 acataaaattttccatccatgaatacaccagaacacatcttcctcggtttattcatg 17356619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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