View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15003_high_2 (Length: 365)

Name: NF15003_high_2
Description: NF15003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15003_high_2
NF15003_high_2
[»] chr1 (5 HSPs)
chr1 (142-365)||(11329755-11329978)
chr1 (142-365)||(11487776-11487999)
chr1 (158-347)||(37380799-37380988)
chr1 (5-75)||(11330045-11330115)
chr1 (5-75)||(11488066-11488136)


Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 142 - 365
Target Start/End: Complemental strand, 11329978 - 11329755
Alignment:
Q  142 taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11329978 taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac 11329879  T
Q  242 taccatgaaaagagagatgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa 341  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  11329878 taccatgaaaagagagatgatgatgttggcaagcatgctaaggcttcaatactcaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa 11329779  T
Q  342 aagaacatagcttgaagatgaaag 365  Q
    ||||||||||||||||||||||||    
T  11329778 aagaacatagcttgaagatgaaag 11329755  T

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Target: chr1; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 142 - 365
Target Start/End: Complemental strand, 11487999 - 11487776
Alignment:
Q  142 taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11487999 taatagggatgagcatgagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaac 11487900  T
Q  242 taccatgaaaagagagatgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa 341  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  11487899 taccatgaaaagagagatgatgatgttggcaagcatgctaaggcttcaatactcaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaa 11487800  T
Q  342 aagaacatagcttgaagatgaaag 365  Q
    ||||||||||||||||||||||||    
T  11487799 aagaacatagcttgaagatgaaag 11487776  T

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Target: chr1; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 158 - 347
Target Start/End: Complemental strand, 37380988 - 37380799
Alignment:
Q  158 gagaaggataggtcaatggatagaggaaaacgaaaggctcgtgaggaagattttgaattgtctaatcttgatgataaattaaactaccatgaaaagagag 257  Q
    ||||| |||||||| | |||||||||||   | |||||||  |||||||||| |||||    |||||||||||||| | || | ||||||||||||||||    
T  37380988 gagaaagataggtcgagggatagaggaagtaggaaggctcacgaggaagattatgaatcaggtaatcttgatgatagagtagattaccatgaaaagagag 37380889  T
Q  258 atgctgatgttggcaagcatgctaaggcttcaaaacccaatcaagatgatgaagatggtgaaacatcagcatacttgtcatcaaaagaac 347  Q
    |||  |||||||| |||||||  ||||||||||||| ||||||||||||| |||| || || || |||||| ||||||||||||||||||    
T  37380888 atgaggatgttggtaagcatgaaaaggcttcaaaactcaatcaagatgataaagagggggagacttcagcaaacttgtcatcaaaagaac 37380799  T

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Target: chr1; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 11330115 - 11330045
Alignment:
Q  5 gagaagcatagggatagagataagaaggatagggacagtgagaagaaaagggagttggagaaagatagtga 75  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330115 gagaaacatagggatagagataagaaggatagggacagtgagaagaaaagggagttggagaaagatagtga 11330045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 11488136 - 11488066
Alignment:
Q  5 gagaagcatagggatagagataagaaggatagggacagtgagaagaaaagggagttggagaaagatagtga 75  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11488136 gagaaacatagggatagagataagaaggatagggacagtgagaagaaaagggagttggagaaagatagtga 11488066  T

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