View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15004_high_12 (Length: 201)
Name: NF15004_high_12
Description: NF15004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15004_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 37 - 186
Target Start/End: Original strand, 49275308 - 49275457
Alignment:
| Q |
37 |
agtttcaaattaaacatgtaactcactgaaatagtagttagaagcaaatgtacaatcaataatttactttcggtaaacttaaacactgctttactaaaat |
136 |
Q |
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| T |
49275308 |
agtttcaaattaaacatgtaactcactgaaagagtagttataagcaaatgtacaatcaataatttactttcggtaaacttaaacactgctttactaaaat |
49275407 |
T |
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| Q |
137 |
cacaatttacaatgttaggaaagcagatgtttctcaaaggcacgtctctg |
186 |
Q |
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| T |
49275408 |
cacaatttacaatgttaggaaagcagatgttcctcaaaggcacgtctctg |
49275457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 83 - 166
Target Start/End: Original strand, 49278835 - 49278932
Alignment:
| Q |
83 |
aatgtacaatcaataatttactttcggtaaacttaaaca---ctgctttactaaa-----------atcacaatttacaatgttaggaaagcagatgt |
166 |
Q |
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| T |
49278835 |
aatgtacaatcaataatttactttcggtaaccttaaacagttctgctttaataaatattgattaaaatcacaatttacaatgttaggaaagcagatgt |
49278932 |
T |
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